Variant report

Variant	rs17574634
Chromosome Location	chr2:76540365-76540366
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10171569	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12991368	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12991550	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13025355	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13386442	0.82[EUR][1000 genomes]
rs13390508	0.96[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.86[MEX][hapmap];0.90[TSI][hapmap];0.80[EUR][1000 genomes]
rs1526645	0.96[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.81[MEX][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes]
rs1526647	0.96[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35008539	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs66909506	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006097	chr2:76524248-76675427	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv519947	chr2:76537604-76588942	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv874313	chr2:76540365-76591470	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76537000-76542400	Enhancers	Hela-S3	cervix
2	chr2:76539200-76540400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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