Variant report

Variant	rs17575638
Chromosome Location	chr6:37551324-37551325
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37550216..37553079-chr6:37579897..37582643,2	MCF-7	breast:
2	chr6:37550595..37552590-chr6:37645353..37646991,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs804846	0.82[AFR][1000 genomes]
rs9380687	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37534200-37556600	Weak transcription	Right Atrium	heart
2	chr6:37548800-37552400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:37550000-37552200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:37550000-37552400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:37550000-37553600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:37550000-37555600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:37550200-37552000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr6:37550200-37552200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:37550200-37552400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr6:37550200-37553200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:37550200-37555400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr6:37550200-37556000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:37550400-37552000	Enhancers	Primary B cells from peripheral blood	blood
14	chr6:37550400-37552200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:37550400-37556400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:37550600-37551600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:37550600-37552000	Enhancers	Primary B cells from cord blood	blood
18	chr6:37550800-37551400	Enhancers	Primary hematopoietic stem cells	blood
19	chr6:37550800-37551400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:37550800-37551600	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr6:37550800-37551600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr6:37550800-37556200	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr6:37551000-37551400	Enhancers	GM12878-XiMat	blood
24	chr6:37551000-37551400	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr6:37551000-37551600	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr6:37551000-37552600	Enhancers	Spleen	Spleen

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