Variant report

Variant	rs17576872
Chromosome Location	chr6:15401909-15401910
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15401226..15405320-chr6:15407295..15410337,3	K562	blood:
2	chr6:15395497..15398020-chr6:15401720..15405105,3	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2299059	1.00[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1030558	chr6:15234675-15449137	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv538142	chr6:15243960-15404893	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv949448	chr6:15279490-15449441	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv1025512	chr6:15291551-15452395	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv538143	chr6:15291551-15452395	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv1019927	chr6:15351240-15419257	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv538145	chr6:15351240-15419257	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17576872	GMPR	cis	lymphoblastoid	seeQTL

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15365000-15402800	Weak transcription	Dnd41	blood
2	chr6:15396200-15410200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr6:15397400-15405600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:15397600-15405800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:15398000-15406000	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr6:15398400-15405600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:15398600-15405800	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr6:15398600-15406600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr6:15399000-15402600	Enhancers	NHEK	skin
10	chr6:15399000-15404200	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr6:15399000-15410600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:15399200-15402600	Enhancers	Stomach Mucosa	stomach
13	chr6:15399200-15403000	Enhancers	HepG2	liver
14	chr6:15400000-15402600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
15	chr6:15400000-15403200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:15400200-15402400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr6:15400200-15402600	Flanking Active TSS	Brain Germinal Matrix	brain
18	chr6:15400200-15404000	Weak transcription	Spleen	Spleen
19	chr6:15400200-15404200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:15400200-15404200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr6:15400200-15406000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:15400200-15406200	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr6:15400400-15403000	Enhancers	Placenta	Placenta
24	chr6:15400400-15404000	Weak transcription	HMEC	breast
25	chr6:15400400-15412800	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr6:15400600-15402000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:15400600-15402000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr6:15400600-15402400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
29	chr6:15400600-15402600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr6:15400600-15402600	Enhancers	HSMMtube	muscle
31	chr6:15400600-15403400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr6:15400600-15406600	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr6:15400800-15402200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr6:15400800-15411200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr6:15401000-15402000	Enhancers	Liver	Liver
36	chr6:15401000-15403000	Enhancers	Rectal Mucosa Donor 31	rectum
37	chr6:15401200-15402000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr6:15401200-15402000	Enhancers	Fetal Brain Male	brain
39	chr6:15401200-15402200	Weak transcription	Psoas Muscle	Psoas
40	chr6:15401200-15402200	Weak transcription	Right Atrium	heart
41	chr6:15401200-15402400	Weak transcription	Small Intestine	intestine
42	chr6:15401200-15402400	Enhancers	Hela-S3	cervix
43	chr6:15401200-15402600	Enhancers	Duodenum Mucosa	Duodenum
44	chr6:15401200-15402600	Enhancers	Rectal Smooth Muscle	rectum
45	chr6:15401200-15402600	Enhancers	NH-A	brain
46	chr6:15401200-15402800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr6:15401200-15402800	Enhancers	Colon Smooth Muscle	Colon
48	chr6:15401200-15403200	Enhancers	Duodenum Smooth Muscle	Duodenum
49	chr6:15401200-15403600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr6:15401200-15403600	Enhancers	Fetal Kidney	kidney

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