Variant report

Variant	rs175786
Chromosome Location	chr20:15870601-15870602
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs175788	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs175791	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4814410	1.00[CEU][hapmap]
rs6034314	1.00[CEU][hapmap]
rs6043483	1.00[CEU][hapmap]
rs6110787	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15868400-15872000	Enhancers	HSMMtube	muscle
2	chr20:15868600-15871200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr20:15868800-15871400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr20:15869000-15870800	Enhancers	Brain Germinal Matrix	brain
5	chr20:15869000-15871400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr20:15869000-15871600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr20:15869000-15872000	Enhancers	Fetal Muscle Leg	muscle
8	chr20:15869200-15870800	Enhancers	H9 Cell Line	embryonic stem cell
9	chr20:15869200-15871400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr20:15869200-15872000	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr20:15869400-15871000	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr20:15869400-15871200	Enhancers	H1 Cell Line	embryonic stem cell
13	chr20:15869400-15871200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr20:15869400-15872000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr20:15869600-15871000	Enhancers	Fetal Stomach	stomach
16	chr20:15870000-15872200	Enhancers	Primary B cells from peripheral blood	blood
17	chr20:15870200-15871200	Weak transcription	Primary B cells from cord blood	blood
18	chr20:15870400-15871200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr20:15870400-15871200	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr20:15870400-15871400	Enhancers	Psoas Muscle	Psoas
21	chr20:15870400-15871800	Enhancers	HSMM	muscle
22	chr20:15870600-15870800	Enhancers	GM12878-XiMat	blood
23	chr20:15870600-15871800	Weak transcription	Aorta	Aorta

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