Variant report

Variant	rs17580954
Chromosome Location	chr4:149101503-149101504
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17580772	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032794	chr4:149046598-149135489	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537295	chr4:149046598-149135489	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv21049	chr4:149099862-149101623	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
4	nsv595662	chr4:149099889-149101503	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
5	nsv595663	chr4:149099889-149102639	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
6	nsv595669	chr4:149099940-149101503	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
7	nsv595672	chr4:149100175-149101503	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
8	nsv595674	chr4:149100252-149101503	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149045600-149104800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr4:149084000-149106200	Weak transcription	Lung	lung
3	chr4:149087600-149123400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr4:149088000-149113200	Weak transcription	Adipose Nuclei	Adipose
5	chr4:149088000-149113600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr4:149088400-149113000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr4:149088400-149122800	Weak transcription	Brain Angular Gyrus	brain
8	chr4:149092400-149113400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr4:149093000-149102000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr4:149093000-149102000	Weak transcription	Left Ventricle	heart
11	chr4:149094400-149113200	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr4:149094800-149113200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr4:149094800-149124600	Weak transcription	Aorta	Aorta
14	chr4:149095200-149113600	Weak transcription	Pancreas	Pancrea
15	chr4:149095800-149102000	Weak transcription	Psoas Muscle	Psoas
16	chr4:149096000-149102000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr4:149096000-149102600	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr4:149096600-149104800	Weak transcription	Brain Hippocampus Middle	brain
19	chr4:149099000-149102000	Weak transcription	Brain Substantia Nigra	brain
20	chr4:149099000-149116600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr4:149099200-149123600	Weak transcription	Brain Anterior Caudate	brain
22	chr4:149099400-149102400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr4:149100400-149102600	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr4:149101200-149101600	Enhancers	Pancreatic Islets	Pancreatic Islet
25	chr4:149101200-149104000	Enhancers	Fetal Intestine Large	intestine
26	chr4:149101400-149102800	Weak transcription	Small Intestine	intestine

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