Variant report

Variant	rs17581436
Chromosome Location	chr4:96661396-96661397
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10018665	0.84[AMR][1000 genomes]
rs11097476	0.84[AMR][1000 genomes]
rs62307193	0.84[AMR][1000 genomes]
rs62307199	0.84[AMR][1000 genomes]
rs62307200	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830012	chr4:96547783-96746163	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1844506	chr4:96554889-96704333	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv997304	chr4:96575198-96861349	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv1846406	chr4:96599084-96664321	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1010830	chr4:96607025-96862878	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv537191	chr4:96607025-96862878	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv1843331	chr4:96619599-96664321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
8	nsv594915	chr4:96628653-97086618	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96659800-96662200	Enhancers	Brain Hippocampus Middle	brain
2	chr4:96660000-96664400	Enhancers	Brain Substantia Nigra	brain
3	chr4:96660200-96661400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:96660400-96662200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr4:96660600-96662000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr4:96660600-96662000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr4:96660600-96663200	Weak transcription	Brain Anterior Caudate	brain
8	chr4:96660800-96662000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr4:96660800-96662000	Enhancers	Brain Cingulate Gyrus	brain
10	chr4:96660800-96662200	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr4:96661000-96661400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr4:96661000-96661600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr4:96661000-96661800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr4:96661000-96664800	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr4:96661200-96661600	Enhancers	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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