Variant report

Variant	rs17581623
Chromosome Location	chr10:52360613-52360614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:52356810..52366659-chr10:52378806..52385975,25	MCF-7	breast:
2	chr10:52359953..52362709-chr10:52369369..52373300,4	MCF-7	breast:
3	chr10:52337504..52344093-chr10:52356709..52361052,9	K562	blood:
4	chr10:52358660..52367648-chr10:52378481..52386533,25	MCF-7	breast:
5	chr10:52359176..52361319-chr10:52370214..52372763,2	K562	blood:
6	chr10:52359176..52362800-chr10:52370214..52372763,3	K562	blood:
7	chr10:52359260..52360848-chr10:52387112..52388927,2	K562	blood:
8	chr10:52355521..52357816-chr10:52359729..52362613,2	MCF-7	breast:
9	chr10:52351092..52355625-chr10:52355822..52361152,8	K562	blood:

No data

Variant related genes	Relation type
ENSG00000226200	Chromatin interaction
ENSG00000198964	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10508930	0.80[TSI][hapmap]
rs11005708	1.00[CHB][hapmap]
rs11005730	1.00[CHB][hapmap]
rs11005872	1.00[CHB][hapmap]
rs11005882	1.00[CHB][hapmap]
rs11005956	1.00[CHB][hapmap]
rs11595661	1.00[CHB][hapmap]
rs7071001	1.00[CHB][hapmap]
rs7078940	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054775	chr10:51595893-52392361	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1051087	chr10:51886486-52447295	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv916214	chr10:51886486-52458983	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv918212	chr10:51886486-52465482	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv817412	chr10:51911034-52432990	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv469522	chr10:52276564-52447589	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv482564	chr10:52276564-52447589	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52336800-52363000	Weak transcription	Rectal Smooth Muscle	rectum
2	chr10:52338000-52363800	Weak transcription	Fetal Kidney	kidney
3	chr10:52338000-52367000	Weak transcription	Aorta	Aorta
4	chr10:52341200-52373000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr10:52341800-52362000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr10:52343600-52362200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:52346600-52363400	Weak transcription	Adipose Nuclei	Adipose
8	chr10:52346600-52363800	Weak transcription	Spleen	Spleen
9	chr10:52348000-52363400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr10:52348400-52363000	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr10:52349000-52363200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr10:52349200-52363200	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr10:52349400-52363000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr10:52349400-52363000	Weak transcription	Lung	lung
15	chr10:52349600-52361800	Weak transcription	Esophagus	oesophagus
16	chr10:52349600-52363600	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr10:52349600-52364000	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr10:52349600-52364800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr10:52349800-52362600	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr10:52349800-52362600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr10:52349800-52362800	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr10:52349800-52363000	Weak transcription	Duodenum Mucosa	Duodenum
23	chr10:52349800-52363800	Weak transcription	Primary B cells from cord blood	blood
24	chr10:52354000-52361600	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr10:52354200-52362200	Weak transcription	Brain Cingulate Gyrus	brain
26	chr10:52354200-52362600	Weak transcription	Stomach Smooth Muscle	stomach
27	chr10:52354200-52362800	Weak transcription	Fetal Brain Male	brain
28	chr10:52355600-52361800	Weak transcription	Right Atrium	heart
29	chr10:52356400-52361400	Genic enhancers	K562	blood
30	chr10:52356600-52363800	Weak transcription	Fetal Brain Female	brain
31	chr10:52356800-52363400	Weak transcription	Colon Smooth Muscle	Colon
32	chr10:52357200-52361200	Weak transcription	Liver	Liver
33	chr10:52358200-52362800	Enhancers	Fetal Heart	heart
34	chr10:52358400-52367000	Enhancers	Fetal Lung	lung
35	chr10:52358600-52361000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
36	chr10:52358600-52361400	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr10:52358600-52362200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr10:52358800-52362200	Weak transcription	HepG2	liver
39	chr10:52358800-52367800	Enhancers	Brain Hippocampus Middle	brain
40	chr10:52359200-52361000	Enhancers	Placenta	Placenta
41	chr10:52359400-52360800	Enhancers	Left Ventricle	heart
42	chr10:52359400-52361000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr10:52359400-52362200	Enhancers	HSMM	muscle
44	chr10:52359400-52369200	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr10:52359600-52360800	Enhancers	Hela-S3	cervix
46	chr10:52359600-52361200	Enhancers	Brain Anterior Caudate	brain
47	chr10:52359600-52361400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr10:52359600-52362400	Enhancers	HMEC	breast
49	chr10:52359600-52363600	Enhancers	A549	lung
50	chr10:52359600-52363800	Enhancers	NHDF-Ad	bronchial

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