Variant report

Variant	rs175874
Chromosome Location	chr5:167015105-167015106
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs278006	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs278012	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs278014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3095948	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3101179	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv883104	chr5:166971457-167037934	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167010800-167020400	Weak transcription	HSMM	muscle
2	chr5:167010800-167022200	Weak transcription	Fetal Lung	lung
3	chr5:167012800-167015400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:167013400-167015200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:167014200-167015400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:167014200-167015400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr5:167014200-167015400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr5:167014400-167015200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr5:167014400-167015200	Enhancers	Brain Substantia Nigra	brain
10	chr5:167014600-167015200	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr5:167014600-167015400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr5:167014800-167015200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr5:167014800-167015200	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr5:167014800-167015200	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr5:167014800-167015200	Enhancers	Brain Angular Gyrus	brain
16	chr5:167014800-167015200	Enhancers	A549	lung
17	chr5:167015000-167015400	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr5:167015000-167015600	Enhancers	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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