Variant report

Variant	rs17597763
Chromosome Location	chr13:52259036-52259037
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:52017536..52019455-chr13:52258830..52261429,2	MCF-7	breast:
2	chr13:52247393..52250369-chr13:52257477..52259766,2	MCF-7	breast:
3	chr13:52251709..52254335-chr13:52256539..52260633,3	K562	blood:
4	chr13:52257951..52259619-chr13:52271676..52273327,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11616240	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11616606	0.95[EUR][1000 genomes]
rs11618231	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832612	chr13:52176983-52362525	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52232200-52261800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr13:52234000-52277800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr13:52234200-52263200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr13:52237200-52261400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr13:52238600-52259400	Weak transcription	Fetal Stomach	stomach
6	chr13:52239200-52263200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr13:52244800-52262200	Weak transcription	Ovary	ovary
8	chr13:52247200-52277400	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr13:52247600-52261600	Weak transcription	GM12878-XiMat	blood
10	chr13:52247600-52262000	Weak transcription	Primary B cells from peripheral blood	blood
11	chr13:52247600-52300200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr13:52247600-52300200	Weak transcription	Fetal Lung	lung
13	chr13:52247800-52262200	Weak transcription	Spleen	Spleen
14	chr13:52249400-52307600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr13:52249800-52261400	Weak transcription	Brain Anterior Caudate	brain
16	chr13:52249800-52262000	Weak transcription	Brain Angular Gyrus	brain
17	chr13:52250000-52262000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr13:52250400-52261800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr13:52250600-52263200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr13:52250600-52263200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr13:52251000-52261200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr13:52251200-52269600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr13:52253200-52259400	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr13:52253400-52259400	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr13:52253600-52262000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr13:52253800-52259200	Strong transcription	Primary T cells from cord blood	blood
27	chr13:52254400-52270200	Weak transcription	Esophagus	oesophagus
28	chr13:52254400-52273200	Weak transcription	Pancreas	Pancrea
29	chr13:52254600-52293000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr13:52254600-52301800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr13:52255200-52262000	Weak transcription	Brain Cingulate Gyrus	brain
32	chr13:52255400-52263600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr13:52255400-52273200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr13:52255600-52273200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr13:52255800-52261600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr13:52256400-52277800	Weak transcription	HSMMtube	muscle
37	chr13:52256800-52262000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr13:52256800-52263200	Weak transcription	HMEC	breast
39	chr13:52257200-52263600	Weak transcription	NH-A	brain
40	chr13:52257400-52260200	Genic enhancers	HepG2	liver
41	chr13:52257400-52260400	Strong transcription	HSMM	muscle
42	chr13:52257600-52261000	Strong transcription	Primary B cells from cord blood	blood
43	chr13:52257800-52261600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr13:52257800-52261800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr13:52258000-52261600	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr13:52258000-52262000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr13:52258000-52262000	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr13:52258000-52262800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr13:52258000-52273400	Weak transcription	Primary hematopoietic stem cells	blood
50	chr13:52258000-52280400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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