Variant report

Variant	rs17605315
Chromosome Location	chr7:12284648-12284649
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:12250897..12251789-chr7:12283782..12284744,2	MCF-7	breast:
2	chr7:12273399..12275539-chr7:12283095..12285753,2	K562	blood:

Variant related genes	Relation type
ENSG00000106460	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10488193	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12699320	0.82[ASN][1000 genomes]
rs1468800	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16877361	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17165736	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17165737	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17165744	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17165746	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17165750	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17595150	0.80[ASN][1000 genomes]
rs17595402	0.82[ASN][1000 genomes]
rs17665337	0.82[ASN][1000 genomes]
rs60699002	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61225336	0.89[EUR][1000 genomes]
rs6460904	0.96[EUR][1000 genomes]
rs6978684	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73284389	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73299019	0.91[ASN][1000 genomes]
rs73301035	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73677511	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73677523	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73677558	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73678692	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv534432	chr7:12148960-12693032	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1024554	chr7:12214722-12967418	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv538735	chr7:12214722-12967418	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12252000-12285400	Weak transcription	Spleen	Spleen
2	chr7:12271800-12289000	Weak transcription	HSMM	muscle
3	chr7:12280000-12295000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr7:12284400-12285000	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr7:12284600-12284800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links