Variant report

Variant	rs1760801
Chromosome Location	chr1:154259650-154259651
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PAX5	chr1:154259462-154259710	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000252682	TF binding region

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1113142	0.81[AFR][1000 genomes]
rs12023901	0.80[ASN][1000 genomes]
rs12025237	0.82[ASN][1000 genomes]
rs12026615	0.82[ASN][1000 genomes]
rs12027999	0.81[ASN][1000 genomes]
rs12135346	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12733060	0.82[ASN][1000 genomes]
rs12738393	0.82[ASN][1000 genomes]
rs12742691	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12743874	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12749447	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12750321	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1685625	0.84[AFR][1000 genomes]
rs1760802	0.81[ASN][1000 genomes]
rs2274993	0.82[ASN][1000 genomes]
rs2282227	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3790613	0.82[ASN][1000 genomes]
rs3790614	0.82[ASN][1000 genomes]
rs3828077	0.82[ASN][1000 genomes]
rs6666943	0.81[AFR][1000 genomes]
rs6673752	0.82[ASN][1000 genomes]
rs7522777	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999364	chr1:153622634-154419436	Strong transcription Genic enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases
2	nsv535175	chr1:153622634-154419436	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases
3	esv1830240	chr1:153885261-154370938	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	239 gene(s)	inside rSNPs	diseases
4	nsv948413	chr1:153974621-154797272	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
5	nsv1000402	chr1:153991106-154527053	Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	106 gene(s)	inside rSNPs	diseases
6	esv3451054	chr1:154182013-154360141	Genic enhancers Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
7	nsv521887	chr1:154236570-154684106	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:154248400-154261000	Weak transcription	K562	blood
2	chr1:154255800-154261000	Weak transcription	HepG2	liver
3	chr1:154259600-154259800	Weak transcription	Right Atrium	heart
4	chr1:154259600-154260000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links