Variant report

Variant	rs1760961
Chromosome Location	chr14:65698828-65698829
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65682951..65699539-chr14:65874873..65882779,51	MCF-7	breast:
2	chr14:65685385..65700060-chr14:65874568..65884730,76	MCF-7	breast:
3	chr14:65689123..65699940-chr14:65718655..65726829,32	MCF-7	breast:
4	chr14:65698766..65701527-chr14:65799891..65802325,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000266740	Chromatin interaction
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1760960	0.96[CEU][hapmap];1.00[CHB][hapmap];0.96[MEX][hapmap];0.90[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv564933	chr14:65667546-65710580	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65693400-65704200	Weak transcription	Gastric	stomach
2	chr14:65695400-65699000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr14:65696800-65703600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr14:65697200-65699000	Enhancers	Primary B cells from peripheral blood	blood
5	chr14:65697200-65699200	Enhancers	Fetal Intestine Large	intestine
6	chr14:65697200-65699200	Enhancers	Fetal Intestine Small	intestine
7	chr14:65697200-65699200	Enhancers	Stomach Mucosa	stomach
8	chr14:65697200-65703000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr14:65697200-65703200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr14:65697200-65703600	Weak transcription	HSMMtube	muscle
11	chr14:65697200-65704800	Weak transcription	Lung	lung
12	chr14:65697200-65746800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr14:65697400-65699200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr14:65697400-65699200	Enhancers	Brain Anterior Caudate	brain
15	chr14:65697400-65699200	Enhancers	Brain Hippocampus Middle	brain
16	chr14:65697400-65703400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr14:65697400-65703400	Weak transcription	NHEK	skin
18	chr14:65697400-65703600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr14:65697400-65703600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr14:65697400-65704200	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr14:65697400-65704400	Weak transcription	Colonic Mucosa	Colon
22	chr14:65697400-65704600	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr14:65697400-65706000	Weak transcription	Spleen	Spleen
24	chr14:65697400-65710600	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr14:65697600-65703200	Weak transcription	NHLF	lung
26	chr14:65697600-65704600	Weak transcription	K562	blood
27	chr14:65697800-65703200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr14:65697800-65703200	Weak transcription	Osteobl	bone
29	chr14:65698000-65699200	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr14:65698200-65703400	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr14:65698600-65699000	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr14:65698600-65699600	Weak transcription	Left Ventricle	heart
33	chr14:65698600-65700200	Weak transcription	Primary T cells from cord blood	blood
34	chr14:65698600-65703000	Weak transcription	Hela-S3	cervix
35	chr14:65698600-65703200	Weak transcription	A549	lung
36	chr14:65698600-65703200	Weak transcription	NH-A	brain
37	chr14:65698600-65703800	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr14:65698800-65699200	Enhancers	HepG2	liver
39	chr14:65698800-65701200	Weak transcription	Brain Cingulate Gyrus	brain
40	chr14:65698800-65701200	Weak transcription	Placenta	Placenta
41	chr14:65698800-65701400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr14:65698800-65703200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr14:65698800-65703200	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr14:65698800-65703200	Weak transcription	HMEC	breast
45	chr14:65698800-65703600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr14:65698800-65703600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr14:65698800-65703600	Weak transcription	Brain Substantia Nigra	brain
48	chr14:65698800-65704200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr14:65698800-65704200	Weak transcription	Small Intestine	intestine
50	chr14:65698800-65704600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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