Variant report

Variant	rs1761076
Chromosome Location	chr14:32417110-32417111
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32412347..32415225-chr14:32417011..32419996,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258474	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1278931	0.94[ASN][1000 genomes]
rs1278933	0.97[ASN][1000 genomes]
rs1278934	0.99[ASN][1000 genomes]
rs1278935	0.98[ASN][1000 genomes]
rs1278936	0.99[ASN][1000 genomes]
rs1278937	0.99[ASN][1000 genomes]
rs1278938	0.98[ASN][1000 genomes]
rs1278939	0.98[ASN][1000 genomes]
rs1278940	0.98[ASN][1000 genomes]
rs1278941	0.98[ASN][1000 genomes]
rs1278942	0.98[ASN][1000 genomes]
rs1278943	0.97[ASN][1000 genomes]
rs1756720	0.96[ASN][1000 genomes]
rs1761072	0.96[ASN][1000 genomes]
rs2236532	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564182	chr14:32110519-32584337	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1046526	chr14:32110537-32567426	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv526200	chr14:32308511-32454372	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32407400-32419800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:32412200-32418600	Weak transcription	NHDF-Ad	bronchial
3	chr14:32412400-32419600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:32412800-32417400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr14:32412800-32417400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr14:32412800-32419800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr14:32413000-32419000	Weak transcription	Small Intestine	intestine
8	chr14:32413000-32419600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr14:32413400-32418000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr14:32413400-32420800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr14:32413600-32418000	Enhancers	Placenta	Placenta
12	chr14:32413600-32420600	Enhancers	HMEC	breast
13	chr14:32413800-32417600	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr14:32413800-32418800	Weak transcription	Fetal Lung	lung
15	chr14:32413800-32420800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr14:32414000-32419000	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr14:32414200-32419200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr14:32414400-32417200	Weak transcription	Right Ventricle	heart
19	chr14:32414400-32417400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr14:32414400-32417400	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr14:32414400-32417600	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr14:32414400-32419400	Weak transcription	Brain Germinal Matrix	brain
23	chr14:32414600-32417200	Weak transcription	Fetal Brain Female	brain
24	chr14:32414600-32417800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr14:32414600-32418800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr14:32414600-32419400	Weak transcription	Fetal Muscle Leg	muscle
27	chr14:32414600-32419600	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr14:32414600-32419600	Weak transcription	Adipose Nuclei	Adipose
29	chr14:32414600-32419600	Weak transcription	Fetal Muscle Trunk	muscle
30	chr14:32414600-32419600	Weak transcription	Left Ventricle	heart
31	chr14:32414600-32419600	Weak transcription	Right Atrium	heart
32	chr14:32414600-32419800	Weak transcription	Gastric	stomach
33	chr14:32414600-32419800	Weak transcription	Lung	lung
34	chr14:32414600-32419800	Weak transcription	Psoas Muscle	Psoas
35	chr14:32414600-32420000	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr14:32414800-32417200	Weak transcription	Fetal Brain Male	brain
37	chr14:32414800-32417400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
38	chr14:32414800-32420000	Weak transcription	Pancreas	Pancrea
39	chr14:32415200-32418600	Weak transcription	Hela-S3	cervix
40	chr14:32415200-32419600	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr14:32415400-32419000	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr14:32415600-32418800	Weak transcription	Stomach Mucosa	stomach
43	chr14:32415600-32419600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr14:32415800-32418800	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr14:32415800-32418800	Enhancers	A549	lung
46	chr14:32415800-32419800	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr14:32416000-32419200	Weak transcription	Duodenum Mucosa	Duodenum
48	chr14:32416200-32418200	Enhancers	Placenta Amnion	Placenta Amnion
49	chr14:32416400-32417200	Enhancers	Primary T cells from cord blood	blood
50	chr14:32416400-32417800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links