Variant report
Variant | rs17613394 |
---|---|
Chromosome Location | chr11:56066662-56066663 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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Variant related genes | Relation type |
---|---|
OR8I1P | TF binding region |
rs_ID | r2[population] |
---|---|
rs10501352 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs11227513 | 0.81[AMR][1000 genomes] |
rs12577887 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs12785840 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs12788990 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs12789200 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs17150147 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap] |
rs34327676 | 0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs34589016 | 0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72923569 | 1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9943535 | 1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv975114 | chr11:55751535-56124251 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 32 gene(s) | inside rSNPs | diseases |
2 | nsv1044859 | chr11:55900482-56121727 | ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
3 | nsv1050024 | chr11:55900482-56518943 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 52 gene(s) | inside rSNPs | diseases |
4 | nsv497854 | chr11:55917298-56537994 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 50 gene(s) | inside rSNPs | diseases |
5 | nsv832161 | chr11:56046173-56166964 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 11 gene(s) | inside rSNPs | diseases |
No data |