Variant report

Variant	rs17615132
Chromosome Location	chr2:12182114-12182115
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11687540	1.00[CEU][hapmap];0.83[JPT][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.92[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs12328935	0.83[JPT][hapmap]
rs62113769	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62113770	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7565113	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003899	chr2:11789374-12248081	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv999704	chr2:12153766-12243960	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1005069	chr2:12161023-12242734	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1000696	chr2:12162843-12241022	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17615132	GREB1	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:12177800-12182200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr2:12177800-12182400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr2:12177800-12182600	Weak transcription	Primary T cells from cord blood	blood
4	chr2:12177800-12183400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr2:12178000-12182400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr2:12178000-12183600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr2:12178000-12183800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr2:12181400-12185000	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr2:12181600-12193200	Enhancers	Primary B cells from peripheral blood	blood
10	chr2:12182000-12182600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr2:12182000-12184600	Enhancers	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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