Variant report

Variant	rs17615906
Chromosome Location	chr5:128018413-128018414
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10072361	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10491265	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10491266	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13155864	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13183212	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17677724	0.85[EUR][1000 genomes]
rs35742495	0.80[EUR][1000 genomes]
rs9327484	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427734	chr5:127805281-128088632	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830484	chr5:127936347-128087308	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1023405	chr5:127955360-128190069	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv882836	chr5:127999225-128136519	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1022886	chr5:128010041-128040856	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128007000-128018600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:128015400-128022800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr5:128016800-128018800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr5:128017000-128018800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr5:128017000-128018800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr5:128017000-128019000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr5:128017400-128018800	Enhancers	H1 Cell Line	embryonic stem cell
8	chr5:128017400-128018800	Enhancers	Fetal Heart	heart
9	chr5:128017600-128018600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr5:128017600-128018800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr5:128017600-128018800	Enhancers	Fetal Lung	lung
12	chr5:128017800-128018600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr5:128017800-128018800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr5:128018200-128018800	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr5:128018200-128018800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr5:128018200-128020800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr5:128018400-128018600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
18	chr5:128018400-128018800	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr5:128018400-128020400	Weak transcription	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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