The 2.0 version of rSNPBase

Variant report

Variant rs17618239
Chromosome Location chr2:63813357-63813358
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:44 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:63780200-63814800 Weak transcription Psoas Muscle Psoas
2 chr2:63801000-63814400 Weak transcription Primary B cells from cord blood blood
3 chr2:63803600-63813400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
4 chr2:63806000-63813600 Weak transcription HUES64 Cell Line embryonic stem cell
5 chr2:63806200-63813600 Weak transcription iPS-15b Cell Line embryonic stem cell
6 chr2:63806200-63814000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
7 chr2:63806400-63813400 Weak transcription HUES48 Cell Line embryonic stem cell
8 chr2:63806400-63813400 Weak transcription iPS-18 Cell Line embryonic stem cell
9 chr2:63808600-63813800 Weak transcription H9 Cell Line embryonic stem cell
10 chr2:63808600-63814200 Weak transcription Duodenum Smooth Muscle Duodenum
11 chr2:63808800-63813600 Weak transcription Rectal Smooth Muscle rectum
12 chr2:63808800-63814800 Weak transcription Skeletal Muscle Female skeletal muscle
13 chr2:63809000-63813600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
14 chr2:63809000-63813800 Weak transcription Brain Inferior Temporal Lobe brain
15 chr2:63809000-63813800 Weak transcription Brain Substantia Nigra brain
16 chr2:63809000-63814200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
17 chr2:63809000-63814200 Weak transcription Osteobl bone
18 chr2:63809200-63813400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
19 chr2:63809200-63813600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
20 chr2:63809200-63813600 Weak transcription Liver Liver
21 chr2:63809200-63813600 Weak transcription NHEK skin
22 chr2:63809200-63813800 Weak transcription Brain Anterior Caudate brain
23 chr2:63809200-63813800 Weak transcription Right Atrium heart
24 chr2:63809200-63814000 Weak transcription Brain Hippocampus Middle brain
25 chr2:63809200-63814000 Weak transcription NHDF-Ad bronchial
26 chr2:63809200-63814200 Weak transcription Muscle Satellite Cultured Cells --
27 chr2:63809200-63814200 Weak transcription Adipose Nuclei Adipose
28 chr2:63809200-63814200 Weak transcription Right Ventricle heart
29 chr2:63809200-63814600 Weak transcription Stomach Mucosa stomach
30 chr2:63809200-63814800 Weak transcription Left Ventricle heart
31 chr2:63809400-63814200 Weak transcription Colon Smooth Muscle Colon
32 chr2:63809800-63813400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
33 chr2:63809800-63813800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
34 chr2:63809800-63814400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
35 chr2:63809800-63814800 Weak transcription Thymus Thymus
36 chr2:63810000-63813400 Weak transcription Fetal Heart heart
37 chr2:63810400-63814200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
38 chr2:63811200-63813600 Weak transcription K562 blood
39 chr2:63811800-63814600 Weak transcription Fetal Stomach stomach
40 chr2:63812400-63813600 Enhancers Dnd41 blood
41 chr2:63813000-63817800 Active TSS H1 Cell Line embryonic stem cell
42 chr2:63813200-63813400 Flanking Active TSS iPS-20b Cell Line embryonic stem cell
43 chr2:63813200-63813400 Active TSS GM12878-XiMat blood
44 chr2:63813200-63813600 Enhancers Breast Myoepithelial Primary Cells Breast

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Last update: Aug 31, 2015