Variant report

Variant	rs17620740
Chromosome Location	chr6:110419605-110419606
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17543368	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72934070	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72934088	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886535	chr6:110377006-110551463	Strong transcription Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	esv2757188	chr6:110389926-110504680	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	esv2759462	chr6:110389926-110504680	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv1026085	chr6:110396676-110420721	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv604499	chr6:110401183-110420374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	esv1792799	chr6:110411065-110566597	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110402800-110419800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:110405600-110422800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:110405800-110422800	Weak transcription	Ovary	ovary
4	chr6:110410400-110422800	Weak transcription	Primary B cells from cord blood	blood
5	chr6:110411200-110419800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:110411200-110422800	Weak transcription	NH-A	brain
7	chr6:110411600-110420000	Weak transcription	Fetal Brain Female	brain
8	chr6:110412200-110419800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:110412600-110419800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:110414400-110421000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:110415000-110420800	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr6:110416600-110419800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr6:110416600-110420000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr6:110416600-110422200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:110416600-110422800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:110417200-110438600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr6:110417400-110421000	Enhancers	HMEC	breast
18	chr6:110417400-110422200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:110417400-110422800	Weak transcription	Aorta	Aorta
20	chr6:110417600-110422600	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr6:110418200-110419800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:110418200-110436000	Weak transcription	Fetal Brain Male	brain
23	chr6:110418400-110419800	Weak transcription	Fetal Muscle Trunk	muscle
24	chr6:110418400-110420400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr6:110418400-110421600	Weak transcription	Dnd41	blood
26	chr6:110418400-110422800	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr6:110418400-110425000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr6:110418600-110419800	Weak transcription	Fetal Heart	heart
29	chr6:110418600-110419800	Weak transcription	Placenta	Placenta
30	chr6:110418600-110420000	Enhancers	NHEK	skin
31	chr6:110418800-110419800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr6:110418800-110419800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr6:110418800-110419800	Weak transcription	Stomach Smooth Muscle	stomach
34	chr6:110418800-110420000	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr6:110418800-110420600	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr6:110418800-110421000	Weak transcription	Fetal Intestine Small	intestine
37	chr6:110418800-110421600	Weak transcription	Liver	Liver
38	chr6:110418800-110421600	Weak transcription	Fetal Intestine Large	intestine
39	chr6:110418800-110422800	Weak transcription	Fetal Kidney	kidney
40	chr6:110418800-110429000	Weak transcription	Fetal Muscle Leg	muscle
41	chr6:110418800-110437200	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr6:110419000-110419800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:110419000-110419800	Weak transcription	Brain Anterior Caudate	brain
44	chr6:110419000-110419800	Weak transcription	Fetal Stomach	stomach
45	chr6:110419000-110419800	Enhancers	Monocytes-CD14+_RO01746	blood
46	chr6:110419000-110420200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr6:110419000-110421600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr6:110419000-110422200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr6:110419000-110422200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr6:110419000-110422400	Weak transcription	Colon Smooth Muscle	Colon

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