Variant report

Variant	rs1762125
Chromosome Location	chr6:150389158-150389159
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150378184..150381057-chr6:150388223..150390154,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12192777	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12202684	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12202737	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13657	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13729	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2343272	0.87[ASN][1000 genomes]
rs56660383	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73004058	0.87[ASN][1000 genomes]
rs7769252	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs912555	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv3323918	chr6:150327978-150392099	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv886767	chr6:150335407-150400488	Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1026236	chr6:150360882-150408946	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150377800-150389400	Weak transcription	HSMMtube	muscle
2	chr6:150378600-150389400	Weak transcription	Right Atrium	heart
3	chr6:150379600-150389200	Weak transcription	Hela-S3	cervix
4	chr6:150380000-150389600	Weak transcription	Aorta	Aorta
5	chr6:150380200-150389400	Weak transcription	HSMM	muscle
6	chr6:150380600-150389200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:150380800-150389200	Weak transcription	HMEC	breast
8	chr6:150380800-150389400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:150381000-150389200	Weak transcription	Lung	lung
10	chr6:150381400-150389200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr6:150381600-150389200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr6:150381600-150389200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr6:150381600-150389200	Weak transcription	Right Ventricle	heart
14	chr6:150381600-150389400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:150381600-150389400	Weak transcription	Primary hematopoietic stem cells	blood
16	chr6:150381800-150389200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:150381800-150389200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr6:150381800-150389400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr6:150382000-150389200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:150382000-150389200	Weak transcription	Esophagus	oesophagus
21	chr6:150382200-150389200	Weak transcription	Pancreas	Pancrea
22	chr6:150382600-150389400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr6:150382800-150389400	Weak transcription	NH-A	brain
24	chr6:150383000-150389200	Weak transcription	NHLF	lung
25	chr6:150383200-150389400	Weak transcription	Fetal Brain Female	brain
26	chr6:150383800-150389200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:150383800-150389400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:150384000-150389400	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr6:150384800-150389400	Weak transcription	Fetal Kidney	kidney
30	chr6:150385000-150389400	Weak transcription	Fetal Lung	lung
31	chr6:150385200-150389400	Weak transcription	Ovary	ovary
32	chr6:150385800-150389200	Weak transcription	Fetal Muscle Trunk	muscle
33	chr6:150386600-150389600	Weak transcription	NHEK	skin
34	chr6:150386800-150389200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr6:150387000-150389200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr6:150387000-150389200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr6:150387000-150389200	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr6:150387000-150389200	Weak transcription	Osteobl	bone
39	chr6:150387000-150389400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr6:150387000-150389600	Weak transcription	Gastric	stomach
41	chr6:150387200-150389200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:150387200-150389200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr6:150387200-150389200	Weak transcription	Spleen	Spleen
44	chr6:150388400-150389400	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr6:150388600-150389200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr6:150388600-150389400	Weak transcription	Fetal Intestine Small	intestine
47	chr6:150388600-150389600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr6:150388600-150390000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr6:150388800-150389600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
50	chr6:150389000-150389200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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