Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1013641	0.84[AFR][1000 genomes]
rs12581553	0.94[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs1699160	0.94[CHB][hapmap];0.87[CHD][hapmap];0.90[JPT][hapmap]
rs17625679	0.81[AFR][1000 genomes]
rs2279833	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34365267	0.84[AFR][1000 genomes]
rs428073	0.94[CHB][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap]
rs514826	0.88[CHB][hapmap];0.87[CHD][hapmap];0.95[JPT][hapmap]
rs556081	0.87[CHB][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap]
rs55957752	0.82[AFR][1000 genomes]
rs56237350	0.92[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs58833755	0.84[AFR][1000 genomes]
rs59848754	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60840022	0.81[AFR][1000 genomes]
rs7298005	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7307848	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7311865	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7960344	0.94[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs7966814	0.85[AFR][1000 genomes]
rs882926	0.94[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs955134	0.94[ASN][1000 genomes]
rs956873	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899547	chr12:118791441-118896304	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv930978	chr12:118866332-119450600	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs17625759	IQCD	cis	parietal	SCAN
rs17625759	SUDS3	cis	cerebellum	SCAN
rs17625759	OAS2	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118871200-118881800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr12:118876000-118879800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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