Variant report
| Variant | rs17625864 |
|---|---|
| Chromosome Location | chr14:84638837-84638838 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:3)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:3 , 50 per page) page:
1
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-RP11-497E19.2.1-11 | chr14:84638664-84638970 | NONHSAT038100 |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000259012 | TF binding region |
| ENSG00000258762 | TF binding region |
| ENSG00000258923 | TF binding region |
rSNPs within LD-proxies of this variant (count:7)
| rs_ID | r2[population] |
|---|---|
| rs10498571 | 0.84[CEU][hapmap] |
| rs12879379 | 0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1462338 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17119756 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34390169 | 0.88[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7142799 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[TSI][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7159787 | 0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv565376 | chr14:84612088-84644822 | Enhancers Weak transcription | TF binding regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv976360 | chr14:84637552-84639420 | Inactive region | TF binding regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
