Variant report

Variant	rs17626310
Chromosome Location	chr21:27922183-27922184
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17537285	1.00[ASN][1000 genomes]
rs17625811	1.00[ASN][1000 genomes]
rs59128112	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056506	chr21:27332898-28049880	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv544412	chr21:27332898-28049880	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv587335	chr21:27715263-27955385	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:27886000-27923000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr21:27886200-27944200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr21:27892000-27930400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr21:27901800-27931400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr21:27903400-27932800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr21:27906000-27931200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr21:27906200-27933000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr21:27908400-27932600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr21:27908800-27930200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr21:27912600-27928800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr21:27912600-27942600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr21:27913000-27930800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr21:27914600-27944200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr21:27916400-27932400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr21:27917000-27922200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr21:27917000-27922200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr21:27919400-27922600	Weak transcription	Fetal Stomach	stomach
18	chr21:27919600-27925600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr21:27919600-27927200	Weak transcription	Primary hematopoietic stem cells	blood
20	chr21:27919600-27929400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr21:27920000-27923000	Weak transcription	Adipose Nuclei	Adipose
22	chr21:27920000-27930200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr21:27920000-27936200	Weak transcription	HUVEC	blood vessel
24	chr21:27920200-27934600	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr21:27920800-27926800	Weak transcription	Right Atrium	heart
26	chr21:27921000-27931400	Weak transcription	Left Ventricle	heart
27	chr21:27921200-27922400	Enhancers	Fetal Lung	lung
28	chr21:27921800-27922400	Enhancers	Fetal Kidney	kidney
29	chr21:27921800-27923000	Active TSS	Pancreatic Islets	Pancreatic Islet
30	chr21:27922000-27922600	Enhancers	Fetal Brain Female	brain

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