Variant report

Variant	rs17626944
Chromosome Location	chr2:21688773-21688774
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10196811	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13424136	0.80[EUR][1000 genomes]
rs13427635	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13431065	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2216954	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2216955	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73919300	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73921203	0.80[EUR][1000 genomes]
rs890080	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs890081	0.80[EUR][1000 genomes]
rs890082	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21646800-21690600	Weak transcription	Aorta	Aorta
2	chr2:21686000-21689400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr2:21687200-21688800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr2:21687200-21689200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr2:21687400-21688800	Weak transcription	Fetal Lung	lung
6	chr2:21688600-21692800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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