Variant report

Variant	rs1762723
Chromosome Location	chr1:72195520-72195521
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10749801	0.94[AFR][1000 genomes]
rs10749802	0.94[AFR][1000 genomes]
rs11209819	0.94[AFR][1000 genomes]
rs1237570	0.94[AFR][1000 genomes]
rs1334986	0.86[AFR][1000 genomes]
rs1674954	0.94[AFR][1000 genomes]
rs17091763	0.84[AFR][1000 genomes]
rs1760607	0.92[AFR][1000 genomes]
rs1762733	0.94[AFR][1000 genomes]
rs1762735	0.94[AFR][1000 genomes]
rs2422018	0.94[AFR][1000 genomes]
rs2483663	0.94[AFR][1000 genomes]
rs2483664	0.94[AFR][1000 genomes]
rs2611625	0.94[AFR][1000 genomes]
rs2637688	0.94[AFR][1000 genomes]
rs2637689	0.94[AFR][1000 genomes]
rs2781151	0.94[AFR][1000 genomes]
rs2783044	0.94[AFR][1000 genomes]
rs2783045	0.94[AFR][1000 genomes]
rs2783050	0.80[AFR][1000 genomes]
rs2794308	0.94[AFR][1000 genomes]
rs2991329	0.80[AFR][1000 genomes]
rs2992131	0.94[AFR][1000 genomes]
rs4556309	0.94[AFR][1000 genomes]
rs492016	0.94[AFR][1000 genomes]
rs500847	0.80[AFR][1000 genomes]
rs503093	0.80[AFR][1000 genomes]
rs523835	0.80[AFR][1000 genomes]
rs553162	0.94[AFR][1000 genomes]
rs568430	0.92[AFR][1000 genomes]
rs6663352	0.94[AFR][1000 genomes]
rs693808	1.00[AFR][1000 genomes]
rs72948041	0.84[AFR][1000 genomes]
rs7513706	0.94[AFR][1000 genomes]
rs7553341	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949599	chr1:71655652-72327802	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1007250	chr1:71998391-72350683	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv534992	chr1:71998391-72350683	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv948821	chr1:72049987-72477221	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1003446	chr1:72060680-72419918	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv461884	chr1:72077549-72238691	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv546476	chr1:72077549-72238691	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv461895	chr1:72079898-72206799	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv546477	chr1:72079898-72206799	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv1006188	chr1:72081620-72215373	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv534993	chr1:72081620-72215373	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv817447	chr1:72098815-72558020	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv1008210	chr1:72099161-72374197	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv533779	chr1:72124095-72241965	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	nsv830181	chr1:72155983-72296578	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:72189400-72197000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr1:72189600-72197600	Weak transcription	Thymus	Thymus
3	chr1:72191400-72198800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr1:72194200-72195800	Weak transcription	Dnd41	blood

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