Variant report

Variant	rs1762732
Chromosome Location	chr1:72080604-72080605
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10493486	0.82[EUR][1000 genomes]
rs10889923	0.81[JPT][hapmap]
rs11209804	0.80[EUR][1000 genomes]
rs11209815	0.80[CHB][hapmap]
rs11209818	0.83[YRI][hapmap]
rs11576565	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs1213510	0.81[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.84[YRI][hapmap]
rs1213511	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1213513	0.92[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12136092	0.80[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap]
rs12404086	0.81[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap]
rs1350645	0.91[CHB][hapmap];0.80[JPT][hapmap]
rs1350646	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs1577396	0.81[JPT][hapmap]
rs1610385	0.81[JPT][hapmap]
rs2422016	0.80[JPT][hapmap]
rs2422017	0.80[JPT][hapmap]
rs2422019	0.85[JPT][hapmap]
rs2422021	0.91[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs2422022	0.91[CHB][hapmap];0.80[JPT][hapmap]
rs2781160	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs2794307	0.91[CHB][hapmap];0.80[JPT][hapmap]
rs4146731	0.81[JPT][hapmap]
rs568412	0.84[JPT][hapmap]
rs591031	0.82[CHB][hapmap];0.85[JPT][hapmap];0.83[YRI][hapmap]
rs627774	0.81[CEU][hapmap];0.86[JPT][hapmap]
rs638508	0.80[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.83[YRI][hapmap]
rs6688112	0.82[JPT][hapmap]
rs6696052	0.82[JPT][hapmap]
rs6704081	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs717350	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs7522708	0.84[JPT][hapmap]
rs7529884	0.81[JPT][hapmap]
rs7538638	0.81[ASN][1000 genomes]
rs915021	0.82[JPT][hapmap]
rs954299	0.82[CHB][hapmap];0.85[JPT][hapmap];0.83[YRI][hapmap]
rs954300	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs954301	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs988786	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949599	chr1:71655652-72327802	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1007250	chr1:71998391-72350683	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv534992	chr1:71998391-72350683	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv948821	chr1:72049987-72477221	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1003446	chr1:72060680-72419918	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv461884	chr1:72077549-72238691	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv546476	chr1:72077549-72238691	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv461895	chr1:72079898-72206799	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv546477	chr1:72079898-72206799	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:72072200-72085200	Weak transcription	Colon Smooth Muscle	Colon
2	chr1:72076000-72081800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr1:72076400-72081600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr1:72080400-72080800	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet

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