Variant report

Variant	rs176278
Chromosome Location	chr4:19005452-19005453
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10020388	0.84[ASN][1000 genomes]
rs1349668	0.84[ASN][1000 genomes]
rs1349669	0.84[ASN][1000 genomes]
rs1452542	0.89[EUR][1000 genomes]
rs1452558	0.84[ASN][1000 genomes]
rs1452560	0.84[ASN][1000 genomes]
rs1452561	0.84[ASN][1000 genomes]
rs1452562	0.84[ASN][1000 genomes]
rs1452566	0.84[ASN][1000 genomes]
rs1452567	0.84[ASN][1000 genomes]
rs1452568	0.84[ASN][1000 genomes]
rs1452569	0.84[ASN][1000 genomes]
rs1452570	0.84[ASN][1000 genomes]
rs1452571	0.84[ASN][1000 genomes]
rs16897950	1.00[ASN][1000 genomes]
rs183278	1.00[ASN][1000 genomes]
rs1840036	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs185936	0.84[ASN][1000 genomes]
rs1901618	0.84[ASN][1000 genomes]
rs1993179	0.84[ASN][1000 genomes]
rs207278	0.84[ASN][1000 genomes]
rs207279	0.84[ASN][1000 genomes]
rs207360	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs207361	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs207363	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs207366	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs207367	1.00[ASN][1000 genomes]
rs207369	0.84[ASN][1000 genomes]
rs207370	0.84[ASN][1000 genomes]
rs207373	0.84[ASN][1000 genomes]
rs207374	0.84[ASN][1000 genomes]
rs207376	0.84[ASN][1000 genomes]
rs207378	0.84[ASN][1000 genomes]
rs207380	0.84[ASN][1000 genomes]
rs207381	0.84[ASN][1000 genomes]
rs207382	0.84[ASN][1000 genomes]
rs207383	0.84[ASN][1000 genomes]
rs207384	0.84[ASN][1000 genomes]
rs207400	0.84[ASN][1000 genomes]
rs2123315	0.84[ASN][1000 genomes]
rs2123316	0.84[ASN][1000 genomes]
rs2123321	0.84[ASN][1000 genomes]
rs2256795	0.84[ASN][1000 genomes]
rs2537918	0.84[ASN][1000 genomes]
rs2537924	0.84[ASN][1000 genomes]
rs2537929	0.84[ASN][1000 genomes]
rs2537930	0.84[ASN][1000 genomes]
rs2537931	0.84[ASN][1000 genomes]
rs2537932	0.84[ASN][1000 genomes]
rs2537933	0.84[ASN][1000 genomes]
rs2537934	0.84[ASN][1000 genomes]
rs2537935	0.84[ASN][1000 genomes]
rs2537937	0.84[ASN][1000 genomes]
rs2537938	0.84[ASN][1000 genomes]
rs2537939	0.84[ASN][1000 genomes]
rs2537945	0.84[ASN][1000 genomes]
rs2537946	0.84[ASN][1000 genomes]
rs2601574	0.84[ASN][1000 genomes]
rs2601575	0.84[ASN][1000 genomes]
rs2601576	0.84[ASN][1000 genomes]
rs2601580	0.84[ASN][1000 genomes]
rs2601582	0.84[ASN][1000 genomes]
rs2601595	0.84[ASN][1000 genomes]
rs28473192	0.89[EUR][1000 genomes]
rs55754950	1.00[ASN][1000 genomes]
rs61509191	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533087	chr4:18362040-19176896	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv532708	chr4:18596861-19176896	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv878723	chr4:18668957-19005988	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1000054	chr4:18839588-19271261	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv537051	chr4:18839588-19271261	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1008625	chr4:18880048-19148705	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1000563	chr4:18924475-19246818	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1003321	chr4:18936051-19117825	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv878724	chr4:18985954-19115862	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv3448027	chr4:18991732-19009185	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19004200-19006800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:19005200-19006600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:19005200-19012400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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