Variant report

Variant	rs17628565
Chromosome Location	chr2:66914024-66914025
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr2:66913804-66914314	MCF10A-Er-Src	breast:	n/a	chr2:66913880-66913887
2	FOS	chr2:66913843-66914294	MCF10A-Er-Src	breast:	n/a	chr2:66914074-66914085 chr2:66914071-66914083
3	MYC	chr2:66913963-66914129	MCF10A-Er-Src	breast:	n/a	n/a
4	MAFK	chr2:66913909-66914243	HepG2	liver:	n/a	chr2:66914066-66914082 chr2:66914066-66914081 chr2:66914071-66914080 chr2:66914065-66914079 chr2:66914066-66914077 chr2:66914067-66914078 chr2:66914067-66914078 chr2:66914066-66914077
5	CEBPB	chr2:66914005-66914298	K562	blood:	n/a	n/a
6	CEBPB	chr2:66913978-66914295	Hela-S3	cervix:	n/a	n/a
7	MAFK	chr2:66913911-66914193	HepG2	liver:	n/a	chr2:66914066-66914082 chr2:66914066-66914081 chr2:66914071-66914080 chr2:66914065-66914079 chr2:66914066-66914077 chr2:66914067-66914078 chr2:66914067-66914078 chr2:66914066-66914077
8	FOS	chr2:66914022-66914195	MCF10A-Er-Src	breast:	n/a	chr2:66914074-66914085 chr2:66914071-66914083
9	CEBPB	chr2:66913950-66914290	IMR90	lung:	n/a	n/a
10	MAFK	chr2:66913929-66914215	K562	blood:	n/a	chr2:66914066-66914082 chr2:66914066-66914081 chr2:66914071-66914080 chr2:66914065-66914079 chr2:66914066-66914077 chr2:66914067-66914078 chr2:66914067-66914078 chr2:66914066-66914077
11	STAT3	chr2:66913916-66914190	MCF10A-Er-Src	breast:	n/a	n/a
12	FOS	chr2:66913889-66914294	MCF10A-Er-Src	breast:	n/a	chr2:66914074-66914085 chr2:66914071-66914083
13	E2F4	chr2:66913957-66914524	MCF10A-Er-Src	breast:	n/a	n/a
14	STAT3	chr2:66913808-66914262	MCF10A-Er-Src	breast:	n/a	chr2:66913880-66913887
15	FOS	chr2:66913914-66914300	MCF10A-Er-Src	breast:	n/a	chr2:66914074-66914085 chr2:66914071-66914083
16	POLR2A	chr2:66913845-66914178	SK-N-MC	brain:	n/a	n/a
17	CEBPB	chr2:66914023-66914179	A549	lung:	n/a	n/a
18	MAFF	chr2:66913948-66914225	HepG2	liver:	n/a	chr2:66914064-66914082
19	MAFK	chr2:66913905-66914254	IMR90	lung:	n/a	chr2:66914066-66914082 chr2:66914066-66914081 chr2:66914071-66914080 chr2:66914065-66914079 chr2:66914066-66914077 chr2:66914067-66914078 chr2:66914067-66914078 chr2:66914066-66914077

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:66913947..66916129-chr2:66918375..66920320,2	K562	blood:

Variant related genes	Relation type
ENSG00000232046	TF binding region
ENSG00000232046	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs60933650	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6546262	1.00[CEU][hapmap]
rs6711221	1.00[CEU][hapmap]
rs7605171	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834248	chr2:66756873-66970378	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:66910800-66916000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:66911000-66915400	Weak transcription	Fetal Lung	lung
3	chr2:66912000-66918200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr2:66913200-66914400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr2:66913200-66914400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr2:66913200-66914800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr2:66913400-66914200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:66913400-66914400	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr2:66913400-66914400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr2:66913400-66914800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr2:66913400-66916600	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr2:66913600-66914200	Enhancers	H1 Cell Line	embryonic stem cell
13	chr2:66913600-66914200	Enhancers	H9 Cell Line	embryonic stem cell
14	chr2:66913600-66914200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr2:66913600-66914200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr2:66913600-66914200	Enhancers	Brain Substantia Nigra	brain
17	chr2:66913600-66914400	Enhancers	Fetal Kidney	kidney
18	chr2:66913600-66914400	Enhancers	NHEK	skin
19	chr2:66913800-66914200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr2:66913800-66915400	Enhancers	Rectal Smooth Muscle	rectum
21	chr2:66914000-66915400	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr2:66914000-66915400	Weak transcription	Fetal Stomach	stomach
23	chr2:66914000-66916000	Active TSS	Colon Smooth Muscle	Colon
24	chr2:66914000-66918000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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