Variant report

Variant	rs17633824
Chromosome Location	chr7:50195343-50195344
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10248405	0.86[GIH][hapmap]
rs10248511	0.81[CHD][hapmap];0.86[GIH][hapmap]
rs17633812	0.89[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464444	chr7:49671882-50454736	Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv606897	chr7:49671883-50454736	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv498090	chr7:49708644-50427714	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1020869	chr7:49712860-50457544	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50186600-50195400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr7:50189200-50195400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr7:50189200-50203400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr7:50189600-50195400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr7:50189600-50195400	Weak transcription	Dnd41	blood
6	chr7:50189800-50195400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr7:50193200-50195400	Weak transcription	Primary B cells from cord blood	blood
8	chr7:50193400-50195400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr7:50193600-50195400	Weak transcription	GM12878-XiMat	blood
10	chr7:50194400-50196200	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr7:50195000-50196200	Enhancers	Primary hematopoietic stem cells	blood
12	chr7:50195000-50196800	Enhancers	Primary B cells from peripheral blood	blood
13	chr7:50195200-50195600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr7:50195200-50195800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr7:50195200-50196200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr7:50195200-50196800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr7:50195200-50196800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr7:50195200-50196800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr7:50195200-50197000	Enhancers	Primary T cells from cord blood	blood
20	chr7:50195200-50197000	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr7:50195200-50197000	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr7:50195200-50197200	Enhancers	Fetal Thymus	thymus
23	chr7:50195200-50197600	Enhancers	Thymus	Thymus

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