Variant report

Variant	rs1763526
Chromosome Location	chr6:134498239-134498240
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:134487196-134500129	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr6:134485272-134500241	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:134497565..134500024-chr6:134569368..134571128,2	MCF-7	breast:
2	chr6:134493834..134499692-chr6:134846848..134856264,17	MCF-7	breast:
3	chr6:134495880..134498282-chr6:134775356..134777682,2	MCF-7	breast:

Variant related genes	Relation type
SGK1	TF binding region
ENSG00000118515	Chromatin interaction
ENSG00000232310	Chromatin interaction
ENSG00000231971	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1743963	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1743964	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1763528	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492292	chr6:134464255-135028540	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv1026369	chr6:134468470-135122264	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	nsv538444	chr6:134468470-135122264	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134490600-134500200	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr6:134494400-134498600	Active TSS	Sigmoid Colon	Sigmoid Colon
3	chr6:134494400-134499600	Active TSS	Small Intestine	intestine
4	chr6:134494400-134500200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:134494600-134498400	Active TSS	Brain Angular Gyrus	brain
6	chr6:134494600-134499000	Active TSS	Duodenum Smooth Muscle	Duodenum
7	chr6:134495200-134498400	Active TSS	Brain Hippocampus Middle	brain
8	chr6:134495800-134498600	Active TSS	Duodenum Mucosa	Duodenum
9	chr6:134495800-134500000	Active TSS	Hela-S3	cervix
10	chr6:134496800-134498400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:134497200-134499000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr6:134497200-134499000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr6:134497200-134499400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
14	chr6:134497400-134498600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:134497400-134498600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr6:134497400-134498600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr6:134497400-134498800	Enhancers	HMEC	breast
18	chr6:134497400-134499000	Enhancers	Primary T cells fromperipheralblood	blood
19	chr6:134497400-134499000	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr6:134497400-134499000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr6:134497400-134499400	Weak transcription	K562	blood
22	chr6:134497400-134499800	Active TSS	Rectal Smooth Muscle	rectum
23	chr6:134497400-134500000	Enhancers	HepG2	liver
24	chr6:134497600-134498400	Active TSS	Rectal Mucosa Donor 31	rectum
25	chr6:134497600-134498600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr6:134497600-134498800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr6:134497600-134499200	Enhancers	Primary B cells from peripheral blood	blood
28	chr6:134497600-134499200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr6:134497600-134499200	Enhancers	Placenta	Placenta
30	chr6:134497600-134499400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
31	chr6:134497800-134498400	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr6:134497800-134498600	Enhancers	Fetal Intestine Small	intestine
33	chr6:134497800-134498800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr6:134497800-134498800	Enhancers	Primary T helper cells fromperipheralblood	blood
35	chr6:134497800-134498800	Weak transcription	NHEK	skin
36	chr6:134497800-134499000	Enhancers	Primary hematopoietic stem cells	blood
37	chr6:134497800-134499000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
38	chr6:134497800-134499000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr6:134497800-134499000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr6:134497800-134499200	Bivalent Enhancer	Fetal Muscle Leg	muscle
41	chr6:134497800-134499200	Bivalent Enhancer	Fetal Thymus	thymus
42	chr6:134497800-134499200	Enhancers	HSMM	muscle
43	chr6:134497800-134499400	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr6:134497800-134499800	Active TSS	Colonic Mucosa	Colon
45	chr6:134498000-134498400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr6:134498000-134498400	Enhancers	Primary T cells from cord blood	blood
47	chr6:134498000-134498400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
48	chr6:134498000-134498400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr6:134498000-134498400	Enhancers	Muscle Satellite Cultured Cells	--
50	chr6:134498000-134498400	Enhancers	Brain Anterior Caudate	brain

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