Variant report

Variant	rs17637981
Chromosome Location	chr19:35811898-35811899
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:35755149..35764508-chr19:35799437..35813142,44	MCF-7	breast:

Variant related genes	Relation type
ENSG00000105698	Chromatin interaction
ENSG00000105699	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11666282	0.89[CEU][hapmap]
rs11670792	0.94[CEU][hapmap]
rs11673522	0.89[CEU][hapmap]
rs12461927	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs12463142	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs17705279	0.94[CEU][hapmap];0.89[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1811170	0.87[EUR][1000 genomes]
rs720308	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs720309	0.94[CEU][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1060100	chr19:35658505-36170042	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv543993	chr19:35658505-36170042	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
4	nsv510765	chr19:35708226-35890668	Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
5	esv2758497	chr19:35711078-35887113	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
6	esv2758758	chr19:35711078-35887113	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
7	nsv833810	chr19:35782588-35971959	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:35807800-35812000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr19:35807800-35815800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr19:35808000-35812200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr19:35808000-35812800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr19:35808200-35812000	Enhancers	Placenta	Placenta
6	chr19:35808400-35812000	Enhancers	Spleen	Spleen
7	chr19:35808600-35812000	Enhancers	Brain Cingulate Gyrus	brain
8	chr19:35809400-35812000	Enhancers	Brain Substantia Nigra	brain
9	chr19:35809400-35812200	Enhancers	Brain Hippocampus Middle	brain
10	chr19:35809600-35812000	Enhancers	Brain Angular Gyrus	brain
11	chr19:35809600-35812200	Enhancers	GM12878-XiMat	blood
12	chr19:35809800-35812000	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr19:35809800-35812200	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr19:35810000-35812000	Enhancers	Brain Anterior Caudate	brain
15	chr19:35810000-35812000	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr19:35810000-35812200	Enhancers	Primary hematopoietic stem cells	blood
17	chr19:35810400-35835200	Weak transcription	Fetal Lung	lung
18	chr19:35810600-35817000	Weak transcription	HepG2	liver
19	chr19:35811200-35812000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr19:35811400-35812000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr19:35811400-35812000	Enhancers	Liver	Liver
22	chr19:35811400-35814600	Enhancers	Primary B cells from peripheral blood	blood
23	chr19:35811600-35812000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
24	chr19:35811600-35812200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr19:35811600-35814200	Enhancers	Primary B cells from cord blood	blood
26	chr19:35811600-35814800	Weak transcription	NHDF-Ad	bronchial
27	chr19:35811600-35832200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr19:35811800-35812800	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr19:35811800-35817600	Weak transcription	Ovary	ovary

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