Variant report

Variant	rs17638138
Chromosome Location	chr5:90665473-90665474
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:90527849..90530830-chr5:90663969..90665527,2	K562	blood:
2	chr5:90511811..90514758-chr5:90664819..90666474,2	K562	blood:
3	chr5:90637573..90640340-chr5:90662979..90665694,4	K562	blood:
4	chr5:90552461..90554626-chr5:90663698..90666654,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GPR98-8	chr5:90664553-90666789	NONHSAT102757

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17638833	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90653400-90666800	Weak transcription	Pancreas	Pancrea
2	chr5:90653400-90670400	Weak transcription	Right Atrium	heart
3	chr5:90653600-90666200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr5:90653600-90666200	Weak transcription	Psoas Muscle	Psoas
5	chr5:90653600-90666400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr5:90653600-90666800	Weak transcription	Gastric	stomach
7	chr5:90653600-90669400	Weak transcription	Small Intestine	intestine
8	chr5:90653800-90665800	Weak transcription	HepG2	liver
9	chr5:90654600-90666200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr5:90654800-90665800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr5:90659000-90669400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr5:90659800-90666400	Weak transcription	Aorta	Aorta
13	chr5:90660000-90669400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:90661400-90667800	Weak transcription	Colonic Mucosa	Colon
15	chr5:90661600-90669400	Weak transcription	Esophagus	oesophagus
16	chr5:90662000-90668800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr5:90662400-90666200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr5:90662400-90673000	Strong transcription	Fetal Intestine Large	intestine
19	chr5:90662800-90668400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr5:90662800-90672400	Strong transcription	Primary neutrophils fromperipheralblood	blood
21	chr5:90663000-90666400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr5:90663000-90667600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr5:90663000-90668800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr5:90663000-90670400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr5:90663000-90671600	Strong transcription	Fetal Muscle Leg	muscle
26	chr5:90663000-90672400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr5:90663000-90672400	Strong transcription	Muscle Satellite Cultured Cells	--
28	chr5:90663000-90672800	Strong transcription	Adipose Nuclei	Adipose
29	chr5:90663000-90673400	Strong transcription	HUES48 Cell Line	embryonic stem cell
30	chr5:90663000-90673600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr5:90663000-90674200	Strong transcription	NH-A	brain
32	chr5:90663000-90674400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr5:90663000-90674400	Strong transcription	Placenta	Placenta
34	chr5:90663000-90674400	Strong transcription	Fetal Thymus	thymus
35	chr5:90663000-90674600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr5:90663200-90666600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr5:90663200-90667200	Strong transcription	Duodenum Smooth Muscle	Duodenum
38	chr5:90663200-90667800	Strong transcription	Fetal Lung	lung
39	chr5:90663200-90668400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr5:90663200-90668800	Strong transcription	Liver	Liver
41	chr5:90663200-90668800	Strong transcription	Fetal Kidney	kidney
42	chr5:90663200-90671200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr5:90663200-90671200	Strong transcription	NHLF	lung
44	chr5:90663200-90671400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr5:90663200-90671400	Strong transcription	Cortex derived primary cultured neurospheres	brain
46	chr5:90663200-90671600	Strong transcription	Skeletal Muscle Female	skeletal muscle
47	chr5:90663200-90672400	Strong transcription	Osteobl	bone
48	chr5:90663200-90672600	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr5:90663200-90673000	Strong transcription	Primary B cells from cord blood	blood
50	chr5:90663200-90673000	Strong transcription	Fetal Muscle Trunk	muscle

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