Variant report

Variant	rs1763885
Chromosome Location	chr10:61294973-61294974
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1414629	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1619518	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1696800	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1696801	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1853258	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2263266	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2393536	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2454767	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895564	chr10:61220923-61327502	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv551150	chr10:61286904-61330297	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1763885	C10orf107	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61286000-61296400	Weak transcription	Ovary	ovary
2	chr10:61293800-61296400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:61294200-61295800	Enhancers	Colon Smooth Muscle	Colon
4	chr10:61294600-61296200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:61294600-61298400	Weak transcription	Lung	lung
6	chr10:61294800-61295000	Enhancers	Stomach Smooth Muscle	stomach
7	chr10:61294800-61295800	Weak transcription	Duodenum Smooth Muscle	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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