Variant report

Variant	rs17639988
Chromosome Location	chr6:37680592-37680593
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37677399..37679341-chr6:37680360..37683613,3	MCF-7	breast:
2	chr6:37679084..37680662-chr6:37692343..37694069,2	K562	blood:
3	chr6:37679512..37681252-chr6:37684864..37686953,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13196308	1.00[CHB][hapmap]
rs13205226	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs66993776	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv994460	chr6:37672682-37686270	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37673400-37681200	Weak transcription	NHEK	skin
2	chr6:37674000-37681200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:37674000-37681200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr6:37674000-37681200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:37674000-37693800	Weak transcription	Right Atrium	heart
6	chr6:37676200-37681200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:37677800-37681200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:37677800-37681200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:37677800-37681200	Weak transcription	NHDF-Ad	bronchial
10	chr6:37677800-37681400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:37678000-37681200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:37678200-37681000	Weak transcription	HMEC	breast
13	chr6:37678200-37681200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:37678200-37681200	Weak transcription	A549	lung
15	chr6:37678400-37681200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:37679600-37682400	Enhancers	K562	blood
17	chr6:37680200-37681600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr6:37680200-37681800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:37680400-37680800	Weak transcription	NHLF	lung
20	chr6:37680400-37681600	Enhancers	Osteobl	bone
21	chr6:37680400-37682800	Enhancers	NH-A	brain
22	chr6:37680400-37683000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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