Variant report

Variant	rs17640020
Chromosome Location	chr1:211770133-211770134
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211758328..211760166-chr1:211768188..211770174,2	K562	blood:
2	chr1:211764016..211768731-chr1:211768736..211774092,7	K562	blood:
3	chr1:211760606..211762712-chr1:211767556..211770438,2	K562	blood:
4	chr1:211769278..211771749-chr1:211790049..211793183,3	K562	blood:
5	chr1:211769278..211770974-chr1:211790049..211792905,2	K562	blood:
6	chr1:211769129..211771317-chr1:211772525..211775535,3	K562	blood:
7	chr1:211769453..211771427-chr1:211815206..211817109,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17696510	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28408172	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4279905	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs633972	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9430076	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832514	chr1:211630247-211794963	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211757400-211775200	Weak transcription	Fetal Intestine Small	intestine
2	chr1:211764600-211770600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr1:211766000-211770400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr1:211766000-211772200	Weak transcription	Placenta	Placenta
5	chr1:211766200-211770800	Weak transcription	NHLF	lung
6	chr1:211766400-211770600	Weak transcription	NHDF-Ad	bronchial
7	chr1:211766800-211771400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:211768600-211771800	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr1:211768600-211772400	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr1:211769000-211770600	Enhancers	Liver	Liver
11	chr1:211769200-211771200	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr1:211769400-211770800	Enhancers	HepG2	liver
13	chr1:211769600-211770200	Enhancers	Fetal Intestine Large	intestine
14	chr1:211769600-211770600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr1:211769800-211772200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr1:211770000-211771800	Enhancers	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
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