Variant report

Variant	rs17641604
Chromosome Location	chr8:49842784-49842785
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11515036	0.85[AMR][1000 genomes]
rs12682003	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13277226	0.85[ASN][1000 genomes]
rs13279837	0.90[AFR][1000 genomes]
rs1441004	0.85[AMR][1000 genomes]
rs1837690	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1992375	0.85[AMR][1000 genomes]
rs2203065	0.82[EUR][1000 genomes]
rs34236473	0.81[AFR][1000 genomes]
rs870397	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49836800-49843200	Weak transcription	Esophagus	oesophagus
2	chr8:49837800-49846200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr8:49838600-49843000	Weak transcription	Osteobl	bone
4	chr8:49838800-49843000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:49842000-49842800	Enhancers	Primary B cells from peripheral blood	blood
6	chr8:49842000-49846400	Weak transcription	HMEC	breast
7	chr8:49842200-49846400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr8:49842400-49842800	Flanking Active TSS	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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