Variant report

Variant	rs17647145
Chromosome Location	chr15:93070469-93070470
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11074078	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2168357	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2168359	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4778003	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55660509	0.81[ASN][1000 genomes]
rs55964147	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56089822	0.81[ASN][1000 genomes]
rs7165860	0.83[ASN][1000 genomes]
rs7176790	0.83[ASN][1000 genomes]
rs72749892	0.85[ASN][1000 genomes]
rs72751767	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7402246	0.91[ASN][1000 genomes]
rs8034091	0.93[ASN][1000 genomes]
rs8040515	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1049561	chr15:92758434-93097965	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
4	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
5	esv2751542	chr15:93053681-93091815	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93065200-93070600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr15:93065200-93070600	Weak transcription	Right Ventricle	heart
3	chr15:93065600-93070600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr15:93067800-93070600	Weak transcription	Left Ventricle	heart
5	chr15:93067800-93072400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:93068000-93070600	Weak transcription	HSMM	muscle
7	chr15:93068000-93070800	Weak transcription	Gastric	stomach
8	chr15:93069000-93070600	Weak transcription	Pancreas	Pancrea
9	chr15:93069000-93070600	Weak transcription	Psoas Muscle	Psoas
10	chr15:93069200-93070600	Weak transcription	Colon Smooth Muscle	Colon
11	chr15:93069200-93070600	Weak transcription	Fetal Heart	heart
12	chr15:93069200-93070600	Weak transcription	Fetal Muscle Leg	muscle
13	chr15:93069200-93070600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr15:93069400-93070600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr15:93069800-93073800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
16	chr15:93070400-93070800	Enhancers	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
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