Variant report

Variant	rs17647490
Chromosome Location	chr5:15628574-15628575
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11956557	0.80[JPT][hapmap]
rs12055284	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1429034	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17647484	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17704046	0.81[CHB][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2059900	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs2964265	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2964271	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2964272	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3097352	0.94[ASN][1000 genomes]
rs3097353	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3762978	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4558990	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57447423	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6554889	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs680474	0.83[AMR][1000 genomes]
rs6867762	0.83[AMR][1000 genomes]
rs7721329	0.86[ASN][1000 genomes]
rs7736101	0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs891196	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516929	chr5:15087791-15870300	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1023068	chr5:15095221-15863583	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv869040	chr5:15097602-15866117	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv530222	chr5:15151662-15851485	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv830214	chr5:15589809-15791032	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3507774	chr5:15593461-15822407	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv3507776	chr5:15593461-15822407	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv4732	chr5:15598325-15636520	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15585000-15630200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr5:15593400-15633400	Weak transcription	Fetal Lung	lung
3	chr5:15600600-15645400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:15610400-15635200	Weak transcription	Fetal Stomach	stomach
5	chr5:15613600-15635200	Weak transcription	Right Ventricle	heart
6	chr5:15620800-15635000	Weak transcription	Lung	lung
7	chr5:15620800-15635400	Weak transcription	Psoas Muscle	Psoas
8	chr5:15621400-15630000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr5:15621400-15635400	Weak transcription	Aorta	Aorta
10	chr5:15621800-15629200	Weak transcription	Left Ventricle	heart
11	chr5:15621800-15629600	Weak transcription	HSMM	muscle
12	chr5:15625200-15629600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr5:15625400-15629600	Weak transcription	NHDF-Ad	bronchial
14	chr5:15625800-15629200	Weak transcription	Ovary	ovary
15	chr5:15625800-15630800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr5:15627400-15629800	Enhancers	Spleen	Spleen
17	chr5:15627600-15629200	Weak transcription	Right Atrium	heart
18	chr5:15627600-15635400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr5:15627600-15648000	Weak transcription	Fetal Muscle Leg	muscle
20	chr5:15627800-15628600	Weak transcription	Brain Hippocampus Middle	brain
21	chr5:15627800-15629200	Weak transcription	HSMMtube	muscle
22	chr5:15627800-15629600	Weak transcription	Fetal Heart	heart
23	chr5:15627800-15635000	Weak transcription	Brain Angular Gyrus	brain
24	chr5:15627800-15635000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr5:15627800-15637000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr5:15628400-15628600	Enhancers	Adipose Nuclei	Adipose

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