Variant report

Variant	rs17647874
Chromosome Location	chr15:93193566-93193567
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:93191617..93195403-chr15:93257490..93261490,4	MCF-7	breast:
2	chr15:93191674..93195100-chr15:93197023..93199781,4	K562	blood:
3	chr15:93191935..93193654-chr15:93222060..93224471,2	MCF-7	breast:
4	chr15:93191674..93194202-chr15:93197134..93199781,2	K562	blood:

Variant related genes	Relation type
ENSG00000185442	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11074091	0.93[CHB][hapmap];0.89[JPT][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12909377	1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.80[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2173059	0.85[CEU][hapmap];0.92[EUR][1000 genomes]
rs2201658	0.94[EUR][1000 genomes]
rs285773	0.86[CEU][hapmap];0.83[JPT][hapmap];0.90[EUR][1000 genomes]
rs3743360	0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
3	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
4	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
5	nsv1040501	chr15:93177153-93286393	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93171000-93197400	Weak transcription	Primary T cells from cord blood	blood
2	chr15:93182000-93197800	Weak transcription	Small Intestine	intestine
3	chr15:93182600-93197200	Weak transcription	Fetal Kidney	kidney
4	chr15:93183200-93198400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr15:93186400-93194200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr15:93187400-93194000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr15:93187400-93194000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr15:93187600-93195800	Weak transcription	Brain Angular Gyrus	brain
9	chr15:93187800-93195600	Weak transcription	Fetal Muscle Trunk	muscle
10	chr15:93189000-93194000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr15:93189000-93195600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr15:93189000-93197000	Weak transcription	Brain Hippocampus Middle	brain
13	chr15:93189200-93195200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr15:93189200-93195400	Weak transcription	Right Ventricle	heart
15	chr15:93189400-93193600	Weak transcription	Fetal Lung	lung
16	chr15:93189400-93193600	Weak transcription	Placenta	Placenta
17	chr15:93189400-93194000	Weak transcription	Fetal Muscle Leg	muscle
18	chr15:93189400-93197000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr15:93189400-93197000	Weak transcription	Esophagus	oesophagus
20	chr15:93190400-93194200	Enhancers	Gastric	stomach
21	chr15:93190600-93197000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr15:93190800-93194000	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr15:93190800-93195400	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr15:93191000-93193600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr15:93191000-93194000	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr15:93191000-93194200	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr15:93191000-93196600	Weak transcription	HSMM	muscle
28	chr15:93191000-93197400	Weak transcription	HSMMtube	muscle
29	chr15:93191400-93194200	Enhancers	Pancreas	Pancrea
30	chr15:93191800-93194200	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr15:93191800-93195400	Weak transcription	Fetal Intestine Small	intestine
32	chr15:93192000-93193600	Weak transcription	Left Ventricle	heart
33	chr15:93192000-93193600	Weak transcription	Lung	lung
34	chr15:93192000-93193800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr15:93192000-93193800	Weak transcription	Right Atrium	heart
36	chr15:93192000-93195400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr15:93192000-93196800	Weak transcription	Liver	Liver
38	chr15:93192000-93197400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr15:93192200-93193600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr15:93192200-93193600	Weak transcription	Stomach Smooth Muscle	stomach
41	chr15:93192200-93194000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr15:93192400-93193600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr15:93192400-93195400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr15:93192600-93193600	Weak transcription	Stomach Mucosa	stomach
45	chr15:93192800-93195600	Weak transcription	HUVEC	blood vessel
46	chr15:93193000-93193800	Weak transcription	Brain Cingulate Gyrus	brain
47	chr15:93193000-93195000	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr15:93193000-93195200	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr15:93193000-93196200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr15:93193200-93193600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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