Variant report

Variant	rs17649913
Chromosome Location	chr1:220983402-220983403
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:220983246..220984120-chr1:221014308..221015139,2	MCF-7	breast:
2	chr1:220983223..220984127-chr1:221376560..221377458,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1335920	0.88[ASN][1000 genomes]
rs17596144	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17596947	0.88[ASN][1000 genomes]
rs1874124	0.88[ASN][1000 genomes]
rs2642417	1.00[ASN][1000 genomes]
rs2642420	1.00[CHB][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2642422	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs34404525	0.88[ASN][1000 genomes]
rs34621709	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6541160	1.00[CHB][hapmap];0.91[GIH][hapmap]
rs66488325	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7549963	0.88[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17649913	MOSC2	cis	parietal	SCAN

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220961400-220983800	Weak transcription	Esophagus	oesophagus
2	chr1:220961600-220983600	Weak transcription	Pancreas	Pancrea
3	chr1:220961800-220983800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr1:220965200-220985400	Weak transcription	Aorta	Aorta
5	chr1:220965600-220983600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr1:220965800-220983800	Weak transcription	Fetal Lung	lung
7	chr1:220966400-220996000	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr1:220966800-220985200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr1:220967600-220983800	Weak transcription	Psoas Muscle	Psoas
10	chr1:220970400-220985800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr1:220971200-220986400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr1:220971200-220991400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr1:220972200-220983800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr1:220972200-220984000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr1:220972800-220987600	Weak transcription	Fetal Brain Male	brain
16	chr1:220973200-220983800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr1:220973200-220991800	Weak transcription	Brain Anterior Caudate	brain
18	chr1:220973400-221000200	Weak transcription	Placenta	Placenta
19	chr1:220973600-220983800	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr1:220974000-220992800	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr1:220974200-220986800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr1:220974200-220991200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr1:220975200-220992000	Weak transcription	Brain Germinal Matrix	brain
24	chr1:220975600-220983800	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr1:220975600-220983800	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr1:220975600-220988000	Weak transcription	Brain Angular Gyrus	brain
27	chr1:220975600-220991400	Weak transcription	Brain Cingulate Gyrus	brain
28	chr1:220975800-220983800	Weak transcription	Lung	lung
29	chr1:220976200-220983600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr1:220976400-220988000	Weak transcription	Spleen	Spleen
31	chr1:220977600-220983800	Weak transcription	Colonic Mucosa	Colon
32	chr1:220978200-220983600	Strong transcription	Adipose Nuclei	Adipose
33	chr1:220978400-220991200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr1:220979000-220983800	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr1:220979400-220989400	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr1:220979600-220983600	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr1:220979800-220985200	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr1:220980000-220983800	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr1:220980000-220985200	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr1:220980200-220983800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr1:220980200-220984400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr1:220980400-221001400	Weak transcription	Gastric	stomach
43	chr1:220980600-220983800	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr1:220980600-220986600	Weak transcription	Fetal Brain Female	brain
45	chr1:220981000-220987600	Strong transcription	Hela-S3	cervix
46	chr1:220981200-220983600	Enhancers	Colon Smooth Muscle	Colon
47	chr1:220981200-220983800	Enhancers	Rectal Smooth Muscle	rectum
48	chr1:220981200-220984000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr1:220981400-220984000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr1:220981400-220984800	Enhancers	Fetal Heart	heart

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