Variant report

Variant	rs17652304
Chromosome Location	chr5:75877193-75877194
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:75873843..75876744-chr5:75876856..75878367,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17568628	1.00[AFR][1000 genomes]
rs17568753	1.00[AFR][1000 genomes]
rs2227819	1.00[AFR][1000 genomes]
rs2227827	1.00[ASW][hapmap];1.00[AFR][1000 genomes]
rs2227831	1.00[AFR][1000 genomes]
rs34592828	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022032	chr5:75785106-75914003	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv598679	chr5:75823965-75914729	Flanking Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1023953	chr5:75831037-75913784	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1026257	chr5:75831037-75914003	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1016823	chr5:75831037-75915905	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1019669	chr5:75836365-76477788	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv598680	chr5:75839165-75914729	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv598681	chr5:75863987-75902533	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75843800-75884400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:75846800-75902600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr5:75851800-75892000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr5:75852800-75877800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr5:75852800-75877800	Weak transcription	Small Intestine	intestine
6	chr5:75853200-75896400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr5:75859000-75878600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr5:75861200-75889600	Weak transcription	Fetal Stomach	stomach
9	chr5:75861400-75878600	Weak transcription	Pancreas	Pancrea
10	chr5:75862200-75885400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr5:75862600-75877800	Weak transcription	K562	blood
12	chr5:75862800-75880200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr5:75864600-75878200	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr5:75864800-75878200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr5:75865400-75885800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:75867800-75886000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr5:75868000-75878200	Weak transcription	Primary B cells from cord blood	blood
18	chr5:75868000-75878600	Weak transcription	Placenta	Placenta
19	chr5:75868000-75884400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr5:75868000-75885200	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr5:75868000-75885400	Weak transcription	Primary T cells from cord blood	blood
22	chr5:75871400-75878800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr5:75872600-75878400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr5:75873600-75903600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr5:75873800-75877800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr5:75874000-75877800	Weak transcription	Primary B cells from peripheral blood	blood
27	chr5:75874000-75878400	Weak transcription	Fetal Lung	lung
28	chr5:75874000-75892400	Weak transcription	Spleen	Spleen
29	chr5:75874200-75878600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr5:75874200-75878600	Weak transcription	HepG2	liver
31	chr5:75874200-75882000	Weak transcription	Esophagus	oesophagus
32	chr5:75875000-75879200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr5:75875200-75884000	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr5:75875400-75877400	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr5:75876200-75877200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr5:75876200-75878200	Enhancers	Stomach Mucosa	stomach
37	chr5:75876400-75877200	Strong transcription	Primary T cells fromperipheralblood	blood
38	chr5:75876400-75877200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr5:75876400-75879400	Enhancers	Liver	Liver
40	chr5:75876600-75879200	Enhancers	Primary T helper cells PMA-I stimulated	--
41	chr5:75876600-75879200	Enhancers	Fetal Intestine Large	intestine
42	chr5:75876600-75879200	Enhancers	Fetal Intestine Small	intestine
43	chr5:75876600-75879200	Enhancers	Rectal Mucosa Donor 31	rectum
44	chr5:75876600-75879600	Enhancers	Duodenum Mucosa	Duodenum
45	chr5:75876800-75877400	Enhancers	Gastric	stomach
46	chr5:75876800-75877600	Genic enhancers	Primary monocytes fromperipheralblood	blood
47	chr5:75876800-75877800	Enhancers	Colonic Mucosa	Colon
48	chr5:75876800-75877800	Enhancers	GM12878-XiMat	blood
49	chr5:75877000-75877200	Enhancers	H1 Cell Line	embryonic stem cell
50	chr5:75877000-75877200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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