Variant report

Variant	rs17654135
Chromosome Location	chr1:212099909-212099910
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:211848815..211850786-chr1:212097996..212100036,2	K562	blood:
2	chr1:212092565..212095366-chr1:212097974..212099950,2	MCF-7	breast:
3	chr1:212099492..212101681-chr1:212107704..212109737,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000233626	Chromatin interaction
ENSG00000231057	Chromatin interaction
ENSG00000117650	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3339611	chr1:212098880-212100544	Weak transcription Enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	n/a
2	esv3510377	chr1:212098957-212100645	Weak transcription Enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	n/a
3	esv3510378	chr1:212099007-212100535	Weak transcription Enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212084800-212113000	Weak transcription	Brain Anterior Caudate	brain
2	chr1:212085400-212101800	Weak transcription	Colonic Mucosa	Colon
3	chr1:212091000-212102200	Weak transcription	Esophagus	oesophagus
4	chr1:212093800-212101800	Weak transcription	Gastric	stomach
5	chr1:212094200-212103200	Weak transcription	Small Intestine	intestine
6	chr1:212094400-212101400	Weak transcription	Stomach Mucosa	stomach
7	chr1:212094400-212102200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:212095400-212101800	Weak transcription	Right Atrium	heart
9	chr1:212096600-212101800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr1:212098600-212101800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr1:212098600-212102000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr1:212098800-212100000	Weak transcription	K562	blood
13	chr1:212098800-212100800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr1:212098800-212100800	Weak transcription	NHEK	skin
15	chr1:212098800-212101000	Weak transcription	HMEC	breast
16	chr1:212098800-212101200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr1:212098800-212101200	Weak transcription	Hela-S3	cervix
18	chr1:212098800-212101400	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr1:212098800-212101400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr1:212098800-212101600	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr1:212098800-212101600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr1:212098800-212101600	Weak transcription	HepG2	liver
23	chr1:212098800-212101800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr1:212098800-212101800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr1:212098800-212106000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr1:212099000-212100800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr1:212099000-212101400	Weak transcription	A549	lung
28	chr1:212099000-212101600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr1:212099200-212100600	Weak transcription	Fetal Intestine Large	intestine
30	chr1:212099200-212100600	Weak transcription	Fetal Intestine Small	intestine
31	chr1:212099200-212101800	Weak transcription	Fetal Muscle Leg	muscle
32	chr1:212099600-212101600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links