Variant report

Variant	rs17654547
Chromosome Location	chr6:35856307-35856308
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35848876..35852959-chr6:35854286..35857264,7	K562	blood:
2	chr6:35855748..35857943-chr6:35876566..35878655,2	K562	blood:
3	chr6:35844707..35847312-chr6:35855207..35856955,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12110812	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs17654885	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs17706079	0.88[EUR][1000 genomes]
rs17706138	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs73404095	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35800600-35859000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:35807000-35860400	Weak transcription	Brain Angular Gyrus	brain
3	chr6:35817000-35859000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:35824400-35858400	Weak transcription	Colon Smooth Muscle	Colon
5	chr6:35824400-35863800	Weak transcription	Right Ventricle	heart
6	chr6:35825000-35885600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr6:35825200-35874600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:35825400-35856400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr6:35826400-35858800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
10	chr6:35827000-35858800	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:35832000-35856800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr6:35835000-35865400	Weak transcription	Spleen	Spleen
13	chr6:35835600-35873800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr6:35837000-35876800	Weak transcription	Rectal Smooth Muscle	rectum
15	chr6:35837400-35863200	Weak transcription	Pancreas	Pancrea
16	chr6:35837400-35887000	Weak transcription	Psoas Muscle	Psoas
17	chr6:35837400-35887400	Weak transcription	Gastric	stomach
18	chr6:35837800-35863400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr6:35837800-35880600	Weak transcription	Aorta	Aorta
20	chr6:35837800-35886800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr6:35838200-35871400	Weak transcription	HSMMtube	muscle
22	chr6:35838600-35887400	Weak transcription	Small Intestine	intestine
23	chr6:35838800-35885000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr6:35839400-35873000	Weak transcription	NHLF	lung
25	chr6:35843600-35858800	Strong transcription	Primary neutrophils fromperipheralblood	blood
26	chr6:35847200-35857000	Strong transcription	Hela-S3	cervix
27	chr6:35847200-35857200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr6:35847800-35859000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr6:35847800-35862600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr6:35847800-35863200	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr6:35848400-35871400	Weak transcription	Lung	lung
32	chr6:35848400-35876200	Weak transcription	Fetal Muscle Leg	muscle
33	chr6:35848600-35863400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:35849000-35860000	Weak transcription	Brain Hippocampus Middle	brain
35	chr6:35849000-35862800	Weak transcription	Brain Anterior Caudate	brain
36	chr6:35849000-35872800	Weak transcription	Ovary	ovary
37	chr6:35849000-35875600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr6:35849000-35876600	Weak transcription	Fetal Muscle Trunk	muscle
39	chr6:35849200-35885400	Weak transcription	NHDF-Ad	bronchial
40	chr6:35849400-35859000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr6:35849600-35856600	Strong transcription	Primary B cells from cord blood	blood
42	chr6:35849800-35858800	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr6:35849800-35858800	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr6:35850000-35857000	Strong transcription	Dnd41	blood
45	chr6:35850000-35857600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr6:35850000-35858600	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr6:35850000-35861800	Weak transcription	Fetal Kidney	kidney
48	chr6:35850200-35856800	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr6:35850200-35856800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr6:35850200-35856800	Strong transcription	Liver	Liver

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