Variant report

Variant	rs17659152
Chromosome Location	chr15:41209246-41209247
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:41206994..41209856-chr15:41231483..41234125,2	MCF-7	breast:
2	chr15:41208534..41211234-chr15:41247874..41250474,2	K562	blood:
3	chr15:41203448..41205626-chr15:41209190..41211696,4	MCF-7	breast:
4	chr15:41209031..41211718-chr15:41213584..41216163,3	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12050497	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17715742	0.84[CEU][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes]
rs6492970	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904101	chr15:40979651-41275014	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	esv1819092	chr15:41017682-41255750	Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
3	nsv904103	chr15:41123172-41275014	Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	nsv904104	chr15:41149824-41234932	Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv904105	chr15:41149824-41275014	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
6	esv1819792	chr15:41184722-41234825	Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17659152	GPR176	cis	parietal	SCAN
rs17659152	BMF	cis	parietal	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41199800-41210000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr15:41200000-41209400	Weak transcription	Fetal Brain Female	brain
3	chr15:41200200-41209800	Weak transcription	Right Ventricle	heart
4	chr15:41202400-41210000	Weak transcription	Left Ventricle	heart
5	chr15:41203600-41214400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr15:41203800-41209800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:41204600-41210400	Weak transcription	Gastric	stomach
8	chr15:41206200-41212200	Enhancers	Spleen	Spleen
9	chr15:41206400-41209800	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr15:41206600-41210400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr15:41206600-41214400	Weak transcription	Fetal Kidney	kidney
12	chr15:41206800-41211800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
13	chr15:41207200-41211000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr15:41207200-41211000	Weak transcription	Right Atrium	heart
15	chr15:41207200-41211800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr15:41208000-41209800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr15:41208200-41209800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr15:41208200-41210000	Weak transcription	Fetal Lung	lung
19	chr15:41208400-41209600	Weak transcription	HUVEC	blood vessel
20	chr15:41208400-41210000	Enhancers	Lung	lung
21	chr15:41208600-41209600	Weak transcription	Fetal Intestine Large	intestine
22	chr15:41208600-41209600	Weak transcription	Fetal Stomach	stomach
23	chr15:41208800-41209800	Weak transcription	Fetal Intestine Small	intestine
24	chr15:41209000-41209400	Weak transcription	Fetal Muscle Leg	muscle

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