Variant report

Variant	rs17663177
Chromosome Location	chr1:154784077-154784078
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:154762462..154764736-chr1:154782523..154784216,2	MCF-7	breast:
2	chr1:154783206..154790651-chr1:154790786..154795764,8	K562	blood:
3	chr1:154783206..154785391-chr1:154789326..154792302,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12119516	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17719419	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58874821	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60599596	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7417027	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7512194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948413	chr1:153974621-154797272	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
2	nsv532579	chr1:154548165-155262692	Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	575 gene(s)	inside rSNPs	diseases
3	nsv427797	chr1:154559115-154933717	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv470740	chr1:154568683-154796895	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv464050	chr1:154568683-154801247	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv547958	chr1:154568683-154801247	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:154776800-154786000	Weak transcription	Fetal Brain Female	brain
2	chr1:154779000-154785800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:154779800-154786000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr1:154780200-154784200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr1:154780800-154785400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr1:154780800-154786800	Weak transcription	Brain Substantia Nigra	brain
7	chr1:154781000-154785200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr1:154781000-154785800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr1:154781200-154784200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr1:154781200-154784600	Enhancers	Fetal Muscle Leg	muscle
11	chr1:154781200-154785200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr1:154781400-154785800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr1:154781600-154784200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr1:154781600-154784400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr1:154781800-154785400	Weak transcription	Right Atrium	heart
16	chr1:154781800-154786000	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr1:154782000-154786200	Weak transcription	Psoas Muscle	Psoas
18	chr1:154782600-154785000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr1:154782800-154785400	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr1:154783000-154785000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr1:154783000-154785400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr1:154783000-154785400	Weak transcription	Rectal Smooth Muscle	rectum
23	chr1:154783200-154785200	Weak transcription	Brain Anterior Caudate	brain
24	chr1:154783200-154785400	Weak transcription	HSMMtube	muscle
25	chr1:154783200-154785600	Weak transcription	Spleen	Spleen
26	chr1:154783200-154785800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr1:154783200-154786000	Weak transcription	Brain Hippocampus Middle	brain
28	chr1:154783200-154792600	Weak transcription	Lung	lung
29	chr1:154783400-154785200	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr1:154783400-154785400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr1:154783400-154785400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr1:154783400-154785400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr1:154783400-154785400	Weak transcription	Stomach Smooth Muscle	stomach
34	chr1:154783400-154785400	Weak transcription	HMEC	breast
35	chr1:154783400-154785600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr1:154783400-154785600	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr1:154783400-154785600	Weak transcription	HSMM	muscle
38	chr1:154783400-154785600	Weak transcription	NHEK	skin
39	chr1:154783400-154786000	Weak transcription	Stomach Mucosa	stomach
40	chr1:154783400-154787800	Weak transcription	Thymus	Thymus
41	chr1:154783400-154788800	Weak transcription	Colon Smooth Muscle	Colon
42	chr1:154783600-154785400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr1:154783600-154785400	Weak transcription	Fetal Muscle Trunk	muscle
44	chr1:154783800-154785200	Weak transcription	Fetal Thymus	thymus
45	chr1:154783800-154785400	Weak transcription	Left Ventricle	heart
46	chr1:154783800-154785800	Weak transcription	Esophagus	oesophagus
47	chr1:154783800-154786200	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr1:154783800-154787200	Weak transcription	GM12878-XiMat	blood
49	chr1:154784000-154784600	Enhancers	iPS-18 Cell Line	embryonic stem cell
50	chr1:154784000-154786800	Enhancers	H1 Cell Line	embryonic stem cell

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