Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10505304	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10955812	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10955813	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11774062	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11776281	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11776387	0.97[ASN][1000 genomes]
rs11779257	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11785996	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11988163	0.97[ASN][1000 genomes]
rs11995237	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11996328	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11998572	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1352561	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16889705	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16889721	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17739788	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1948674	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1948675	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1948676	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2200811	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2873642	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7008823	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7841787	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7841911	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7845423	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1027039	chr8:118143762-118460954	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831435	chr8:118266417-118466651	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118369200-118371200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr8:118369200-118371400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:118369200-118373000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr8:118369400-118371200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr8:118369400-118372200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr8:118369600-118371400	Enhancers	H1 Cell Line	embryonic stem cell
7	chr8:118369600-118371400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr8:118369800-118371200	Enhancers	Fetal Brain Male	brain
9	chr8:118370200-118371400	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr8:118370400-118371200	Enhancers	Fetal Muscle Leg	muscle
11	chr8:118370400-118371400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr8:118370600-118371400	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr8:118370800-118371400	Enhancers	Fetal Lung	lung

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