Variant report

Variant	rs17667393
Chromosome Location	chr13:91607320-91607321
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10507986	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs12184671	0.85[ASN][1000 genomes]
rs12866129	0.83[ASN][1000 genomes]
rs12873242	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1335553	0.82[ASN][1000 genomes]
rs1335556	0.85[ASN][1000 genomes]
rs1335560	0.82[ASN][1000 genomes]
rs1335575	0.82[ASN][1000 genomes]
rs1335576	0.82[ASN][1000 genomes]
rs1376746	0.82[ASN][1000 genomes]
rs1376747	0.83[ASN][1000 genomes]
rs1597701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17667080	0.82[ASN][1000 genomes]
rs17667353	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17667370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17667497	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17734926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2123011	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2860120	0.83[ASN][1000 genomes]
rs34383868	0.85[ASN][1000 genomes]
rs34636886	0.82[AMR][1000 genomes]
rs34874149	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs35044404	0.85[ASN][1000 genomes]
rs4291788	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4447291	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4537875	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4624029	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4773602	0.83[ASN][1000 genomes]
rs4773603	0.81[ASN][1000 genomes]
rs4773604	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55962639	0.85[ASN][1000 genomes]
rs61968264	0.83[ASN][1000 genomes]
rs61968265	0.83[ASN][1000 genomes]
rs61968294	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67008524	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs717457	0.86[ASN][1000 genomes]
rs723346	0.85[ASN][1000 genomes]
rs747222	0.85[ASN][1000 genomes]
rs9515841	0.82[ASN][1000 genomes]
rs9515842	0.81[ASN][1000 genomes]
rs9515849	0.85[ASN][1000 genomes]
rs9515850	0.85[ASN][1000 genomes]
rs9515851	0.85[ASN][1000 genomes]
rs9515852	0.81[ASN][1000 genomes]
rs9515864	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9523169	0.82[ASN][1000 genomes]
rs9523170	0.83[ASN][1000 genomes]
rs9523171	0.82[ASN][1000 genomes]
rs9523172	0.83[ASN][1000 genomes]
rs9523173	0.82[ASN][1000 genomes]
rs9523177	0.83[ASN][1000 genomes]
rs9523180	0.85[ASN][1000 genomes]
rs9523181	0.85[ASN][1000 genomes]
rs9523182	0.85[ASN][1000 genomes]
rs9523183	0.85[ASN][1000 genomes]
rs9523188	0.85[ASN][1000 genomes]
rs9523190	0.85[ASN][1000 genomes]
rs9523193	0.85[ASN][1000 genomes]
rs9523195	0.84[ASN][1000 genomes]
rs9523196	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9523197	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9523205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9523209	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9523213	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9523215	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs977991	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948709	chr13:90753085-91745571	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv932206	chr13:91370888-91878374	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1042947	chr13:91571040-92416897	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
4	nsv541871	chr13:91571040-92416897	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:91607000-91607600	Enhancers	A549	lung
2	chr13:91607200-91608000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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