Variant report

Variant	rs17667482
Chromosome Location	chr8:118460092-118460093
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10955813	0.80[ASN][1000 genomes]
rs11774062	0.80[ASN][1000 genomes]
rs11776281	0.80[ASN][1000 genomes]
rs11776387	0.80[ASN][1000 genomes]
rs11988163	0.80[ASN][1000 genomes]
rs11995237	0.80[ASN][1000 genomes]
rs11996328	0.80[ASN][1000 genomes]
rs16889721	0.80[ASN][1000 genomes]
rs17739788	0.80[ASN][1000 genomes]
rs17740109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17814704	0.88[EUR][1000 genomes]
rs1844320	0.84[CHB][hapmap]
rs2873642	0.80[ASN][1000 genomes]
rs28834796	0.86[EUR][1000 genomes]
rs7841787	0.80[ASN][1000 genomes]
rs7841911	0.80[ASN][1000 genomes]
rs7845423	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027039	chr8:118143762-118460954	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv831435	chr8:118266417-118466651	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv428525	chr8:118384428-118543349	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv831436	chr8:118384463-118543297	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118457200-118460600	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr8:118458200-118460600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr8:118459200-118460800	Enhancers	HSMM	muscle
4	chr8:118459400-118460200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
5	chr8:118459400-118460200	Enhancers	HSMMtube	muscle
6	chr8:118459400-118460400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr8:118459400-118460400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr8:118459400-118460600	Enhancers	NHEK	skin
9	chr8:118459400-118460800	Enhancers	HUVEC	blood vessel
10	chr8:118459600-118460200	Enhancers	NH-A	brain
11	chr8:118459600-118460400	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr8:118459800-118460200	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr8:118459800-118461000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:118460000-118460400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr8:118460000-118460400	Enhancers	Osteobl	bone
16	chr8:118460000-118460600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr8:118460000-118460800	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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