Variant report

Variant	rs17674892
Chromosome Location	chr5:98121272-98121273
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:98113211..98117452-chr5:98120749..98124460,5	MCF-7	breast:
2	chr5:98105419..98111417-chr5:98120321..98126739,11	MCF-7	breast:
3	chr5:98121084..98123480-chr5:98124476..98127082,2	K562	blood:

Variant related genes	Relation type
ENSG00000174136	Chromatin interaction
ENSG00000246763	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882414	chr5:98063710-98193164	Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98110200-98125200	Transcr. at gene 5' and 3'	NHDF-Ad	bronchial
2	chr5:98110800-98123200	Weak transcription	Aorta	Aorta
3	chr5:98111000-98128800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:98111000-98131800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr5:98111600-98131800	Weak transcription	Placenta	Placenta
6	chr5:98112000-98135800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr5:98112400-98121600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr5:98112400-98122400	Weak transcription	Fetal Heart	heart
9	chr5:98114800-98131400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr5:98115000-98122200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr5:98115000-98125400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr5:98115600-98121400	Strong transcription	Fetal Muscle Trunk	muscle
13	chr5:98115600-98123200	Weak transcription	Primary T cells from cord blood	blood
14	chr5:98115800-98123200	Weak transcription	Right Atrium	heart
15	chr5:98115800-98123800	Genic enhancers	NHEK	skin
16	chr5:98116200-98122000	Weak transcription	Primary B cells from cord blood	blood
17	chr5:98116600-98125200	Genic enhancers	Osteobl	bone
18	chr5:98116800-98123200	Weak transcription	HepG2	liver
19	chr5:98116800-98127600	Weak transcription	Hela-S3	cervix
20	chr5:98117000-98128600	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr5:98117400-98121800	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr5:98117600-98132200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr5:98117800-98121400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr5:98117800-98125000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr5:98117800-98125200	Genic enhancers	Fetal Muscle Leg	muscle
26	chr5:98117800-98125600	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr5:98117800-98128000	Genic enhancers	HSMM	muscle
28	chr5:98118200-98122400	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr5:98118200-98123800	Enhancers	Brain Substantia Nigra	brain
30	chr5:98118400-98123400	Enhancers	Brain Hippocampus Middle	brain
31	chr5:98118400-98131800	Weak transcription	A549	lung
32	chr5:98118600-98121400	Genic enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr5:98118600-98121600	Genic enhancers	Fetal Intestine Large	intestine
34	chr5:98118600-98122600	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr5:98118600-98123400	Genic enhancers	Cortex derived primary cultured neurospheres	brain
36	chr5:98118600-98124400	Enhancers	Sigmoid Colon	Sigmoid Colon
37	chr5:98118800-98122200	Enhancers	Brain Cingulate Gyrus	brain
38	chr5:98118800-98122800	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr5:98118800-98123400	Enhancers	Brain Angular Gyrus	brain
40	chr5:98118800-98123600	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr5:98119000-98126000	Enhancers	Colon Smooth Muscle	Colon
42	chr5:98119200-98122200	Genic enhancers	iPS-18 Cell Line	embryonic stem cell
43	chr5:98119200-98122400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr5:98119200-98123000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr5:98119200-98128800	Weak transcription	Spleen	Spleen
46	chr5:98119200-98129000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr5:98119800-98121600	Enhancers	Rectal Mucosa Donor 29	rectum
48	chr5:98119800-98122400	Enhancers	Fetal Brain Female	brain
49	chr5:98119800-98122800	Genic enhancers	HUES6 Cell Line	embryonic stem cell
50	chr5:98119800-98122800	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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