Variant report

Variant	rs17675599
Chromosome Location	chr7:127535876-127535877
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:127531050..127533876-chr7:127535094..127537920,2	MCF-7	breast:
2	chr7:127518600..127520476-chr7:127534248..127535997,2	K562	blood:
3	chr7:127535349..127538608-chr7:127539437..127541786,4	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17730300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022385	chr7:127246656-127971194	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv539120	chr7:127246656-127971194	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv1016143	chr7:127251359-127726762	Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv526535	chr7:127445594-127623840	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1024743	chr7:127498695-127670004	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127505400-127537800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr7:127505800-127539600	Weak transcription	Small Intestine	intestine
3	chr7:127505800-127542000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr7:127515400-127540600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr7:127516400-127540200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr7:127524800-127538400	Weak transcription	Psoas Muscle	Psoas
7	chr7:127524800-127540400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr7:127525200-127536400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr7:127526200-127544600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr7:127526400-127538000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr7:127526600-127540600	Weak transcription	Fetal Brain Female	brain
12	chr7:127526600-127540600	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr7:127526800-127539600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr7:127527200-127540400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr7:127528800-127540400	Weak transcription	Colonic Mucosa	Colon
16	chr7:127528800-127569200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr7:127529000-127540200	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr7:127529000-127557200	Weak transcription	Esophagus	oesophagus
19	chr7:127529200-127537400	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr7:127529200-127540400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr7:127529200-127540400	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr7:127529200-127540800	Weak transcription	Spleen	Spleen
23	chr7:127529200-127544600	Weak transcription	Thymus	Thymus
24	chr7:127529200-127545600	Weak transcription	Fetal Stomach	stomach
25	chr7:127529200-127546200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr7:127529200-127548400	Weak transcription	Right Ventricle	heart
27	chr7:127529200-127569400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr7:127529400-127542200	Weak transcription	Fetal Heart	heart
29	chr7:127529400-127551000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr7:127530800-127540400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr7:127531200-127540400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr7:127531400-127537600	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr7:127531600-127537200	Weak transcription	NHDF-Ad	bronchial
34	chr7:127531600-127540400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr7:127531800-127542000	Weak transcription	Fetal Kidney	kidney
36	chr7:127532000-127537600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr7:127532200-127540000	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr7:127532200-127569200	Weak transcription	Hela-S3	cervix
39	chr7:127532400-127537200	Weak transcription	HUVEC	blood vessel
40	chr7:127532400-127539600	Weak transcription	Aorta	Aorta
41	chr7:127532400-127540600	Weak transcription	Fetal Muscle Leg	muscle
42	chr7:127532400-127540600	Weak transcription	Gastric	stomach
43	chr7:127532400-127547400	Weak transcription	A549	lung
44	chr7:127532400-127569200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr7:127532600-127537200	Weak transcription	Primary B cells from cord blood	blood
46	chr7:127532600-127538000	Weak transcription	HSMMtube	muscle
47	chr7:127532600-127540000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr7:127532600-127541000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr7:127532600-127541200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr7:127532600-127546000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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