Variant report

Variant	rs17677
Chromosome Location	chr16:31539934-31539935
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:31539583..31542235-chr16:31544201..31546359,2	MCF-7	breast:
2	chr16:31530119..31532090-chr16:31539372..31541784,2	MCF-7	breast:
3	chr16:31493200..31498370-chr16:31536887..31540209,4	K562	blood:
4	chr16:31517756..31521127-chr16:31538452..31541350,5	K562	blood:
5	chr16:31537316..31539067-chr16:31539316..31542062,2	K562	blood:
6	chr16:31517850..31520614-chr16:31538452..31541283,3	K562	blood:

Variant related genes	Relation type
ENSG00000140688	Chromatin interaction
ENSG00000140675	Chromatin interaction
ENSG00000260625	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11150627	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11866003	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13338939	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13339026	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28496948	0.83[ASN][1000 genomes]
rs28509322	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28788792	0.83[ASN][1000 genomes]
rs3813008	0.95[CEU][hapmap]
rs4296276	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4411513	1.00[CEU][hapmap];0.84[CHB][hapmap];0.99[EUR][1000 genomes]
rs4499252	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4503808	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4553646	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4564590	0.81[ASN][1000 genomes]
rs4889545	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4889667	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4889670	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4889671	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4889672	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56060924	0.91[EUR][1000 genomes]
rs57204609	0.83[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs58618301	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs58729087	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59813627	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60075107	0.93[EUR][1000 genomes]
rs61183892	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs62053184	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62053205	0.97[ASN][1000 genomes]
rs62053209	0.95[ASN][1000 genomes]
rs62053210	0.95[ASN][1000 genomes]
rs7196030	0.82[ASN][1000 genomes]
rs7196319	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7196393	0.81[ASN][1000 genomes]
rs7202020	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7203199	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8056084	0.92[CHB][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs8057393	0.97[ASN][1000 genomes]
rs9921592	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9921597	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9923241	0.97[ASN][1000 genomes]
rs9923480	0.92[CHB][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs9928760	0.83[ASN][1000 genomes]
rs9929779	0.84[ASN][1000 genomes]
rs9929825	0.97[ASN][1000 genomes]
rs9937077	0.97[ASN][1000 genomes]
rs9937367	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3392534	chr16:31303038-31573066	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	104 gene(s)	inside rSNPs	diseases
2	nsv905747	chr16:31394179-31888684	Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	123 gene(s)	inside rSNPs	diseases
3	nsv905748	chr16:31427678-31559220	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	94 gene(s)	inside rSNPs	diseases
4	nsv905749	chr16:31427678-31565597	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	96 gene(s)	inside rSNPs	diseases
5	nsv905750	chr16:31427678-31587662	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	98 gene(s)	inside rSNPs	diseases
6	nsv905752	chr16:31436932-31565597	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	95 gene(s)	inside rSNPs	diseases
7	nsv905753	chr16:31436932-31587662	Enhancers Active TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	97 gene(s)	inside rSNPs	diseases
8	nsv905754	chr16:31451699-31565597	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	93 gene(s)	inside rSNPs	diseases
9	nsv1060240	chr16:31495873-31581450	Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
10	esv1823209	chr16:31521276-31580272	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
11	esv3344221	chr16:31526786-31821640	Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
12	esv3323903	chr16:31526802-31821640	Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
13	esv3504445	chr16:31526873-31821580	Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
14	esv3504446	chr16:31526873-31821580	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
15	esv3366795	chr16:31534951-31827424	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31538800-31540800	Flanking Active TSS	K562	blood
2	chr16:31539200-31540000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
3	chr16:31539200-31540200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr16:31539200-31540400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
5	chr16:31539200-31540600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
6	chr16:31539200-31540600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
7	chr16:31539200-31540800	Bivalent Enhancer	Primary B cells from cord blood	blood
8	chr16:31539400-31541200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
9	chr16:31539400-31541600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
10	chr16:31539600-31540000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr16:31539600-31540000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
12	chr16:31539600-31540200	Flanking Bivalent TSS/Enh	H9 Cell Line	embryonic stem cell
13	chr16:31539600-31540200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
14	chr16:31539600-31540400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
15	chr16:31539600-31540400	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
16	chr16:31539600-31540400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
17	chr16:31539600-31540400	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
18	chr16:31539600-31540800	Enhancers	Spleen	Spleen
19	chr16:31539600-31541600	Bivalent/Poised TSS	Fetal Kidney	kidney
20	chr16:31539800-31540000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
21	chr16:31539800-31540000	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr16:31539800-31540000	Enhancers	Aorta	Aorta
23	chr16:31539800-31540200	Bivalent Enhancer	Fetal Muscle Leg	muscle
24	chr16:31539800-31540200	Bivalent Enhancer	Fetal Stomach	stomach
25	chr16:31539800-31540200	Enhancers	Ovary	ovary
26	chr16:31539800-31540200	Enhancers	Right Ventricle	heart
27	chr16:31539800-31540400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
28	chr16:31539800-31540600	Enhancers	Pancreas	Pancrea
29	chr16:31539800-31540800	Bivalent Enhancer	Primary B cells from peripheral blood	blood

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